View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3246_low_2 (Length: 336)

Name: NF3246_low_2
Description: NF3246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3246_low_2
NF3246_low_2
[»] chr1 (2 HSPs)
chr1 (11-313)||(7644309-7644611)
chr1 (198-272)||(7351904-7351979)
[»] chr8 (1 HSPs)
chr8 (48-278)||(26568336-26568565)
[»] chr4 (3 HSPs)
chr4 (51-186)||(24556875-24557009)
chr4 (181-255)||(28313616-28313690)
chr4 (206-275)||(23998964-23999033)
[»] chr5 (1 HSPs)
chr5 (196-276)||(22876454-22876534)
[»] chr2 (4 HSPs)
chr2 (191-250)||(25056840-25056899)
chr2 (198-234)||(5169282-5169318)
chr2 (198-234)||(45107971-45108007)
chr2 (198-234)||(45109690-45109726)
[»] chr6 (1 HSPs)
chr6 (199-276)||(24633788-24633865)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 7644309 - 7644611
Alignment:
Q  11 atgaagtataccaagctcaccacaaagtaagttgtgcagataaacttatggtcccaactcaagaatatgcatgctttgattttgcatgtcttgtacaaac 110  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  7644309 atgaagtatactaagctcaccacaaagtaagttgtgcagataaacttatggtcccaactcaagaatatgcatgctctgatttcgcatgtcttgtacaaac 7644408  T
Q  111 gatcaccgtctttgaaaagcgtgtcttaactttacacgttctatactgatgagttgcagcctagatcaagcgcgaccattctcgtaccagacaaccaatg 210  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7644409 gatcactgtctttgaaaagcgtgtcttaactttacacgttctatactgatgagttgcagcctagatcaagcgcgaccattctcgtaccagacaaccaatg 7644508  T
Q  211 cgaggctctggatcacaaattaataggtatgagtgaccaaagaaatgctcattaaatcaacaaatccatgactatatcaacaaatccaggactataaaag 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7644509 cgaggctctggatcacaaattaataggtatgagtgaccaaagaaatgctcattaaatcaacaaatccatgactatatcaacaaatccaggactataaaag 7644608  T
Q  311 ggg 313  Q
    |||    
T  7644609 ggg 7644611  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 7351979 - 7351904
Alignment:
Q  198 cagacaaccaatgcgaggctctggatcacaaattaatagg-tatgagtgaccaaagaaatgctcattaaatcaaca 272  Q
    ||||||||||||| ||||||||||||||||| ||||| || | ||| ||| |||||||| || ||||||| |||||    
T  7351979 cagacaaccaatgggaggctctggatcacaacttaatgggctttgaatgatcaaagaaaggcccattaaaccaaca 7351904  T

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Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 48 - 278
Target Start/End: Original strand, 26568336 - 26568565
Alignment:
Q  48 agataaacttatggtcccaactcaagaatatgcatgctttgattttgcatgtcttgtacaaacgatcaccgtctttgaaaagcgtgtcttaactttacac 147  Q
    |||||||||| |||||| | ||||| |||||||||||||||||||  ||||||||||||||||||||| ||||||||||| ||| |||||||||| |||     
T  26568336 agataaacttgtggtcctagctcaataatatgcatgctttgatttcacatgtcttgtacaaacgatcaacgtctttgaaa-gcgcgtcttaacttcacat 26568434  T
Q  148 gttctatactgatgagttgcagcctagatcaagcgcgaccattctcgtaccagacaaccaatgcgaggctctggatcacaaattaataggtatgagtgac 247  Q
    ||||| ||  || |||||||||||||||||| |||| |||   |||  ||||||||||||||| |||||| |||||||||||||||| ||| ||||||||    
T  26568435 gttctgtatggacgagttgcagcctagatcacgcgcaaccgcactcaaaccagacaaccaatgggaggctttggatcacaaattaatgggtctgagtgac 26568534  T
Q  248 caaagaaatgctcattaaatcaacaaatcca 278  Q
    ||||||||||| |||||| ||||||||||||    
T  26568535 caaagaaatgcccattaagtcaacaaatcca 26568565  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 24556875 - 24557009
Alignment:
Q  51 taaacttatggtcccaactcaagaatatgcatgctttgattttgcatgtcttgtacaaacgatcaccgtctttgaaaagcgtgtcttaactttacacgtt 150  Q
    ||||||| |||||||| |||||||||||||||||| ||||| | ||||||||| ||||||||||| ||||||| ||||||  |||||||||| || ||||    
T  24556875 taaacttgtggtcccagctcaagaatatgcatgctctgattctacatgtcttgcacaaacgatcaacgtcttt-aaaagcacgtcttaacttcacgcgtt 24556973  T
Q  151 ctatactgatgagttgcagcctagatcaagcgcgac 186  Q
    |  ||| || |||||||||| ||||||| |||||||    
T  24556974 ccgtacggacgagttgcagcttagatcacgcgcgac 24557009  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 28313616 - 28313690
Alignment:
Q  181 cgcgaccattctcgtaccagacaaccaatgcgaggctctggatcacaaattaataggtatgagtgaccaaagaaa 255  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| |||  |||| ||  ||||| ||||||||||    
T  28313616 cgcgaccatactcgaaccagacaaccaatgcgaggctctggatcgcaacataatgggcttgagtaaccaaagaaa 28313690  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 23998964 - 23999033
Alignment:
Q  206 caatgcgaggctctggatcacaaattaataggtatgagtgaccaaagaaatgctcattaaatcaacaaat 275  Q
    ||||| ||||||||||||||||| ||||| ||  || ||||||||||||| || ||||||||||||||||    
T  23998964 caatgggaggctctggatcacaacttaatgggcttgggtgaccaaagaaaggcccattaaatcaacaaat 23999033  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 22876454 - 22876534
Alignment:
Q  196 accagacaaccaatgcgaggctctggatcacaaattaataggtatgagtgaccaaagaaatgctcattaaatcaacaaatc 276  Q
    |||||| |||||| | |||||||||| | |||| || || ||  |||||||||||||||| || |||||||||||||||||    
T  22876454 accagagaaccaacgggaggctctggttgacaactttatgggcttgagtgaccaaagaaaggcccattaaatcaacaaatc 22876534  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 25056899 - 25056840
Alignment:
Q  191 ctcgtaccagacaaccaatgcgaggctctggatcacaaattaataggtatgagtgaccaa 250  Q
    |||||||||||||||| ||| |||||||| |||||||| ||||| ||  |||||||||||    
T  25056899 ctcgtaccagacaacctatgagaggctcttgatcacaacttaatggggttgagtgaccaa 25056840  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 5169282 - 5169318
Alignment:
Q  198 cagacaaccaatgcgaggctctggatcacaaattaat 234  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  5169282 cagacaaccaatgggaggctctggatcacaacttaat 5169318  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 45108007 - 45107971
Alignment:
Q  198 cagacaaccaatgcgaggctctggatcacaaattaat 234  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  45108007 cagacaaccaatgggaggctctggatcacaacttaat 45107971  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 45109726 - 45109690
Alignment:
Q  198 cagacaaccaatgcgaggctctggatcacaaattaat 234  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  45109726 cagacaaccaatgggaggctctggatcacaacttaat 45109690  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 24633865 - 24633788
Alignment:
Q  199 agacaaccaatgcgaggctctggatcacaaattaataggtatgagtgaccaaagaaatgctcattaaatcaacaaatc 276  Q
    |||||||||||| || |||||| ||||||| ||||| ||  ||||| |||||||||| | ||||||| |||| |||||    
T  24633865 agacaaccaatgagaagctctgaatcacaacttaatgggcttgagttaccaaagaaaggatcattaagtcaataaatc 24633788  T

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