View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3246_low_5 (Length: 236)

Name: NF3246_low_5
Description: NF3246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3246_low_5
NF3246_low_5
[»] chr8 (7 HSPs)
chr8 (18-220)||(1782152-1782354)
chr8 (47-103)||(14318416-14318472)
chr8 (47-103)||(18493978-18494034)
chr8 (47-103)||(26981676-26981732)
chr8 (47-103)||(26986790-26986846)
chr8 (47-103)||(34108578-34108634)
chr8 (49-103)||(14314712-14314766)
[»] chr6 (5 HSPs)
chr6 (28-105)||(21936406-21936484)
chr6 (33-101)||(12909606-12909675)
chr6 (33-101)||(12934713-12934782)
chr6 (47-103)||(21276120-21276176)
chr6 (47-95)||(11182996-11183044)
[»] chr7 (7 HSPs)
chr7 (30-103)||(2248853-2248927)
chr7 (47-103)||(12852023-12852079)
chr7 (47-103)||(12857136-12857192)
chr7 (47-103)||(26051368-26051424)
chr7 (47-103)||(26056481-26056537)
chr7 (47-103)||(26060727-26060783)
chr7 (47-103)||(26065840-26065896)
[»] chr4 (11 HSPs)
chr4 (30-103)||(34601825-34601899)
chr4 (30-103)||(47071740-47071814)
chr4 (47-103)||(35096375-35096431)
chr4 (30-103)||(22119056-22119130)
chr4 (33-105)||(14643524-14643597)
chr4 (47-103)||(35091262-35091318)
chr4 (30-103)||(30019638-30019710)
chr4 (30-103)||(3409329-3409403)
chr4 (47-96)||(3424121-3424170)
chr4 (182-219)||(26279592-26279628)
chr4 (47-103)||(32429034-32429090)
[»] scaffold0006 (1 HSPs)
scaffold0006 (30-95)||(144419-144485)
[»] chr5 (6 HSPs)
chr5 (30-103)||(43540564-43540638)
chr5 (47-103)||(9872225-9872281)
chr5 (47-103)||(9877340-9877396)
chr5 (28-95)||(35368631-35368699)
chr5 (48-103)||(39909306-39909361)
chr5 (30-103)||(2024393-2024467)
[»] chr1 (13 HSPs)
chr1 (30-95)||(13654658-13654724)
chr1 (49-103)||(16051534-16051588)
chr1 (30-96)||(19311162-19311229)
chr1 (32-105)||(1188317-1188391)
chr1 (30-102)||(17414304-17414377)
chr1 (47-103)||(28574644-28574700)
chr1 (47-103)||(28598656-28598712)
chr1 (34-101)||(35653036-35653104)
chr1 (28-89)||(10186036-10186098)
chr1 (33-89)||(1188163-1188220)
chr1 (30-94)||(10186312-10186377)
chr1 (47-103)||(3468415-3468471)
chr1 (47-103)||(43359149-43359205)
[»] chr2 (6 HSPs)
chr2 (47-103)||(30283251-30283307)
chr2 (47-103)||(14917183-14917239)
chr2 (47-103)||(17720000-17720056)
chr2 (47-103)||(39178946-39179002)
chr2 (30-103)||(42780522-42780596)
chr2 (47-104)||(45120734-45120791)
[»] scaffold0005 (1 HSPs)
scaffold0005 (33-105)||(173695-173768)
[»] chr3 (17 HSPs)
chr3 (47-103)||(4050155-4050211)
chr3 (47-103)||(4055289-4055345)
chr3 (47-103)||(5481289-5481345)
chr3 (47-103)||(6852753-6852809)
chr3 (47-103)||(6857856-6857912)
chr3 (47-103)||(8458659-8458715)
chr3 (47-103)||(8465097-8465153)
chr3 (47-103)||(10584659-10584715)
chr3 (47-103)||(10672739-10672795)
chr3 (47-103)||(10677852-10677908)
chr3 (47-103)||(33702400-33702456)
chr3 (47-101)||(20891496-20891550)
chr3 (47-96)||(10591103-10591152)
chr3 (35-103)||(29827816-29827885)
chr3 (47-95)||(1302053-1302101)
chr3 (47-103)||(31076201-31076257)
chr3 (47-103)||(31081308-31081364)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 1782152 - 1782354
Alignment:
Q  18 atgattcacgtaaagagttacaactcttgtgaagagttataactttttgttctaaaataattccattattttagaaatctccaacacattctccaaaact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1782152 atgattcacgtaaagagttacaactcttgtgaagagttataactttttgttctaaaataattccattattttagaaatctccaacacattctccaaaact 1782251  T
Q  118 cagacacaatacatcaactacatgcttttactttcnnnnnnnncctagtatgnnnnnnnntaaacattcgttagttagaaacatgaatgaattcgtatac 217  Q
    |||||||||||||||||||||||||||||||||||        |||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  1782252 cagacacaatacatcaactacatgcttttactttcttttttttcctagtatgaaaaaaaataaacattcgttagttagaaacatgaatgaattcgtatac 1782351  T
Q  218 aca 220  Q
    |||    
T  1782352 aca 1782354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 14318472 - 14318416
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  14318472 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 14318416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 18494034 - 18493978
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  18494034 tgaagagttacaacttttggttctaaattgattccattattttggaaatcaccaaca 18493978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 26981732 - 26981676
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  26981732 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 26981676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 26986846 - 26986790
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  26986846 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 26986790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 34108578 - 34108634
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  34108578 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 34108634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 14314766 - 14314712
Alignment:
Q  49 aagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||| ||||||| |||||||| |||||||||||||||  ||||| ||||||    
T  14314766 aagagttacaacttttggttctaaagtaattccattattttgaaaatcaccaaca 14314712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 21936484 - 21936406
Alignment:
Q  28 taaagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaacaca 105  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||||    
T  21936484 taaagagttacaactcttggtgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaacaca 21936406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 12909606 - 12909675
Alignment:
Q  33 agttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaa 101  Q
    |||||||||||||| |||||||||| ||||||| |||||||| | |||||||||||||||||||| ||||    
T  12909606 agttacaactcttggtgaagagttacaacttttggttctaaagtgattccattattttagaaatcaccaa 12909675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 12934713 - 12934782
Alignment:
Q  33 agttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaa 101  Q
    |||||||||||||| |||||||||| ||||||| |||||| | | ||||||||||||| |||||| ||||    
T  12934713 agttacaactcttggtgaagagttacaacttttggttctagagtgattccattattttggaaatcaccaa 12934782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 21276120 - 21276176
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  21276120 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 21276176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 11183044 - 11182996
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaat 95  Q
    |||||||||| ||| ||| |||||||| | |||||||||||||||||||    
T  11183044 tgaagagttacaacatttggttctaaattgattccattattttagaaat 11182996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 2248927 - 2248853
Alignment:
Q  30 aagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    ||||||||||||||||| ||||||||||  |||||| |||||||| | |||||||||||||||||||| ||||||    
T  2248927 aagagttacaactcttgctgaagagttactacttttggttctaaagtgattccattattttagaaatcaccaaca 2248853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 12852023 - 12852079
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  12852023 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 12852079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 12857136 - 12857192
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  12857136 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 12857192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 26051368 - 26051424
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  26051368 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 26051424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 26056481 - 26056537
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  26056481 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 26056537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 26060727 - 26060783
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  26060727 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 26060783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 26065840 - 26065896
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  26065840 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 26065896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 34601899 - 34601825
Alignment:
Q  30 aagagttacaact-cttgtgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    ||||||||||||| || ||||| ||||| ||||||| |||||||||| |||||||||||||||||||| ||||||    
T  34601899 aagagttacaacttctcgtgaaaagttacaacttttagttctaaaatgattccattattttagaaatcaccaaca 34601825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 47071740 - 47071814
Alignment:
Q  30 aagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    ||||||||||||||||| |||||||||| ||||||| ||| |||| | ||||||||||||| |||||| ||||||    
T  47071740 aagagttacaactcttggtgaagagttacaacttttggttgtaaagtgattccattattttggaaatcaccaaca 47071814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 35096375 - 35096431
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| |||||||||||||||| | ||||||||||||| |||||| ||||||    
T  35096375 tgaagagttacaactttttgttctaaagtgattccattattttggaaatcaccaaca 35096431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 22119056 - 22119130
Alignment:
Q  30 aagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    ||||||| ||||||||| |||||||||| ||||||| |||||||| | |||||||||||||  ||||| ||||||    
T  22119056 aagagttgcaactcttgatgaagagttacaacttttggttctaaagtgattccattattttgaaaatcaccaaca 22119130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 14643597 - 14643524
Alignment:
Q  33 agttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaacaca 105  Q
    |||||||||||||| |||||||||| ||||||| |||||||| | |||| ||||||||  ||||| ||||||||    
T  14643597 agttacaactcttggtgaagagttacaacttttggttctaaagtgattcaattattttgtaaatcaccaacaca 14643524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 35091262 - 35091318
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  35091262 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 35091318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 30019710 - 30019638
Alignment:
Q  30 aagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    ||||||||||||||||| |||||||||| |||||  |  |||||| | |||||||||||||||||||| ||||||    
T  30019710 aagagttacaactcttggtgaagagttacaacttgat--tctaaagtgattccattattttagaaatcaccaaca 30019638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 3409403 - 3409329
Alignment:
Q  30 aagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    ||||||||||| ||||| | |||||| | ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  3409403 aagagttacaaatcttggtcaagagtaacaacttttagttctaaagtgattccattattttggaaatcaccaaca 3409329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 3424170 - 3424121
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatc 96  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| ||||||    
T  3424170 tgaagagttacaacttttggttctaaagtgattccattattttggaaatc 3424121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 26279592 - 26279628
Alignment:
Q  182 cattcgttagttagaaacatgaatgaattcgtatacac 219  Q
    |||||||||||||||| |||||||||||||||||||||    
T  26279592 cattcgttagttagaa-catgaatgaattcgtatacac 26279628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 32429090 - 32429034
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| |||| || |||||||| | ||||||||||||| |||||| ||||||    
T  32429090 tgaagagttacaactcttggttctaaagtgattccattattttggaaatcaccaaca 32429034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 144419 - 144485
Alignment:
Q  30 aagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaat 95  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||| | ||||||||||||| |||||    
T  144419 aagagttacaactcttggtgaagagttacaacttttggttctaaagtgattccattattttggaaat 144485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 43540638 - 43540564
Alignment:
Q  30 aagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||| | |||| |||||||| |||||| ||||||    
T  43540638 aagagttacaactcttggtgaagagttacaacttttggttctaaattgattcaattattttggaaatcaccaaca 43540564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 9872281 - 9872225
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  9872281 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 9872225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 9877396 - 9877340
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  9877396 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 9877340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 35368699 - 35368631
Alignment:
Q  28 taaagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaat 95  Q
    ||||||||||||||||||| |||| ||||| |||||||  ||||||| | |||||||| ||||||||||    
T  35368699 taaagagttacaactcttgatgaaaagttacaacttttgattctaaagtgattccattcttttagaaat 35368631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 39909306 - 39909361
Alignment:
Q  48 gaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    ||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  39909306 gaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 39909361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 2024393 - 2024467
Alignment:
Q  30 aagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    ||||||||||||||||| | |||| | | ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  2024393 aagagttacaactcttggtcaagattaacaacttttggttctaaagtgattccattattttggaaatcaccaaca 2024467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 13654658 - 13654724
Alignment:
Q  30 aagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaat 95  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||| | ||||||||||||| |||||    
T  13654658 aagagttacaactcttggtgaagagttacaacttttggttctaaagtgattccattattttggaaat 13654724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 16051534 - 16051588
Alignment:
Q  49 aagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||||||||| |||||||| | |||||||||||||||||||| ||||||    
T  16051534 aagagttataacttttggttctaaagtgattccattattttagaaatcaccaaca 16051588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 19311162 - 19311229
Alignment:
Q  30 aagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatc 96  Q
    ||||||||||||||||| |||||||||| ||||||| ||| |||| | ||||||||||||| ||||||    
T  19311162 aagagttacaactcttggtgaagagttacaacttttggttataaagtgattccattattttggaaatc 19311229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 1188317 - 1188391
Alignment:
Q  32 gagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaacaca 105  Q
    ||||||||||||||| |||| ||||| || |||| |||||||| | ||||||||||||| |||||| ||||||||    
T  1188317 gagttacaactcttggtgaaaagttacaatttttggttctaaagtgattccattattttggaaatcaccaacaca 1188391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 17414377 - 17414304
Alignment:
Q  30 aagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaac 102  Q
    ||||||||||||| ||| |||||||||| || |||| |||||||| | ||||||||||||| |||||| |||||    
T  17414377 aagagttacaacttttggtgaagagttacaagttttggttctaaagtgattccattattttggaaatcaccaac 17414304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 28574644 - 28574700
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  28574644 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 28574700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 28598656 - 28598712
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  28598656 tgaagagttacaacttttggttctaaattgattccattattttggaaatcaccaaca 28598712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 35653104 - 35653036
Alignment:
Q  34 gttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaa 101  Q
    ||||||||||||| |||||||||| ||||||| |||| ||| | ||||||||||||| |||||| ||||    
T  35653104 gttacaactcttggtgaagagttacaacttttggttccaaagtgattccattattttggaaatcaccaa 35653036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 10186036 - 10186098
Alignment:
Q  28 taaagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattatttt 89  Q
    ||||||||||||| ||||| |||||||||| |||||||  ||||||| | |||||||||||||    
T  10186036 taaagagttacaattcttggtgaagagttacaacttttgattctaaagtgattccattatttt 10186098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 1188163 - 1188220
Alignment:
Q  33 agttacaactcttg-tgaagagttataactttttgttctaaaataattccattatttt 89  Q
    |||||||||||||| |||| ||||| ||||||| |||||||| | |||||||||||||    
T  1188163 agttacaactcttggtgaaaagttacaacttttggttctaaagtgattccattatttt 1188220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 10186377 - 10186312
Alignment:
Q  30 aagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaa 94  Q
    ||||||||||||||||| |||||||||| |||||||   |||||| | ||||||||||||| ||||    
T  10186377 aagagttacaactcttggtgaagagttaaaacttttgagtctaaagtgattccattattttggaaa 10186312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 3468415 - 3468471
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||| ||| |||||||  ||||||||| ||||||||||||| |||||| ||||||    
T  3468415 tgaagaattacaacttttgattctaaaatgattccattattttggaaatcaccaaca 3468471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 43359149 - 43359205
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| |||| || |||||||| | ||||||||||||| |||||| ||||||    
T  43359149 tgaagagttacaactcttggttctaaagtgattccattattttggaaatcaccaaca 43359205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 30283307 - 30283251
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||||| ||||||||||||| |||||| ||||||    
T  30283307 tgaagagttacaacttttggttctaaaatgattccattattttggaaatcaccaaca 30283251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 14917239 - 14917183
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  14917239 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 14917183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 17720056 - 17720000
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  17720056 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 17720000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 39178946 - 39179002
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  39178946 tgaagagttacaacttttagttctaaagtgattccattattttggaaatcaccaaca 39179002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 42780522 - 42780596
Alignment:
Q  30 aagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    ||||||||||||| ||| | |||||| | ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  42780522 aagagttacaacttttggtcaagagtaacaacttttggttctaaagtgattccattattttggaaatcaccaaca 42780596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 45120734 - 45120791
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaacac 104  Q
    |||||||||| |||||||  ||||||| | ||||||||||||| |||||| |||||||    
T  45120734 tgaagagttacaacttttaattctaaagtgattccattattttggaaatcaccaacac 45120791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 173695 - 173768
Alignment:
Q  33 agttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaacaca 105  Q
    |||||||||||||| |||||||||| ||||||| |||||||| | |||| ||||||||  ||||| ||||||||    
T  173695 agttacaactcttggtgaagagttacaacttttggttctaaagtgattcaattattttgtaaatcaccaacaca 173768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 4050155 - 4050211
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  4050155 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 4050211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 4055289 - 4055345
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  4055289 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 4055345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 5481345 - 5481289
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  5481345 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 5481289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 6852809 - 6852753
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  6852809 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 6852753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 6857912 - 6857856
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  6857912 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 6857856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 8458659 - 8458715
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  8458659 tgaagagttacaacttttagttctaaagtgattccattattttggaaatcaccaaca 8458715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 8465097 - 8465153
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  8465097 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 8465153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 10584715 - 10584659
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  10584715 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 10584659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 10672795 - 10672739
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  10672795 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 10672739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 10677908 - 10677852
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  10677908 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 10677852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 33702456 - 33702400
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  33702456 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 33702400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 20891496 - 20891550
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaa 101  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||    
T  20891496 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaa 20891550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 10591152 - 10591103
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatc 96  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| ||||||    
T  10591152 tgaagagttacaacttttggttctaaagtgattccattattttggaaatc 10591103  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 29827816 - 29827885
Alignment:
Q  35 ttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||||||| |||||||||| |||||||  ||||||| | |||||||| |||| |||||| ||||||    
T  29827816 ttacaactcttggtgaagagttacaacttttgattctaaagtgattccattcttttggaaatcaccaaca 29827885  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 1302101 - 1302053
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaat 95  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||    
T  1302101 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 1302053  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 31076257 - 31076201
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||| | ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  31076257 tgaagagtcacaacttttggttctaaagtgattccattattttggaaatcaccaaca 31076201  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 31081364 - 31081308
Alignment:
Q  47 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 103  Q
    |||||||| | ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  31081364 tgaagagtcacaacttttggttctaaagtgattccattattttggaaatcaccaaca 31081308  T

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