View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3247_high_1 (Length: 441)
Name: NF3247_high_1
Description: NF3247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3247_high_1 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Original strand, 37936258 - 37936686
Alignment:
| Q |
16 |
ataccaactatgatactcaccaatgcaacaatgtgaaaagctattctccaaccaggtatgccaaagatcgatgttgaggctagcagtacagcaaagagat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37936258 |
ataccaactatgatactcaccaatgcaacaatgtgaaaagctattctccaaccaggtatgccaaagatcgatgttgaggctagcagtacagcaaagagat |
37936357 |
T |
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| Q |
116 |
taccaatgatgcttccaaggtttcctgtaagttgcagccacccaaaagccatgccacgattgctatcaacagtggagtcagcaaccagggacagaattgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37936358 |
taccaatgatgcttccaaggtttcctgtaagttgcagccacccaaaagccatgccacgattgctatcaacagtggagtcagcaaccagggacagaattgc |
37936457 |
T |
|
| Q |
216 |
tggagcaacaatggcaagtccaatcccatttaaacctcttgaaattgccacctaagaatccgaataaagnnnnnnnngtgggaattagaaaacatgggcg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37936458 |
tggagcaacaatggcaagtccaatcccatttaaacctcttgaaattgccacctaagaatccgaataaagaaaaaaaagtgggaattagaaaacatgggcg |
37936557 |
T |
|
| Q |
316 |
agtc---attgtatgatgtactgataaaggatataccacattcaccgaacaacttaaatttttgaatattttgtgaaaaatgccttcaaaacttatgtcc |
412 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37936558 |
agtcattattgtatgatgtactgatcaaggatataccacattcaccaaacaacttaaatttttgaatattttgtgaaaaatgccttcaaaacttatgtgc |
37936657 |
T |
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| Q |
413 |
aatgtgtgtaacttttgcattttcattta |
441 |
Q |
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| T |
37936658 |
aatgtgtgtaacttttgcattttcattta |
37936686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 37921257 - 37921510
Alignment:
| Q |
16 |
ataccaactatgatactcaccaatgcaacaatgtgaaaagctattctccaaccaggtatgccaaagatcgatgttgaggctagcagtacagcaaagagat |
115 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||||| ||||||||| |
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| T |
37921257 |
ataccaactatgacactcaccaatgcaacaatgtgaaaagctattctccaaccagatataccaaagattgatgttgaggctagtagtactgcaaagagag |
37921356 |
T |
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| Q |
116 |
taccaatgatgcttccaaggtttcctgtaagttgcagccacccaaaagccatgccacgattgctatcaacagtggagtcagcaaccagggacagaattgc |
215 |
Q |
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||||||||||||||| ||||||||||| || || |||||||||||||| | ||||| |||||||||| |||||||| |||| |||||| | ||||| |
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| T |
37921357 |
aaccaatgatgcttccgaggtttcctgttagatgaagccacccaaaagctacaccacggttgctatcaattgtggagtcggcaattagggactggattgc |
37921456 |
T |
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| Q |
216 |
tggagcaacaatggcaagtccaatcccatttaaacctcttgaaattgccaccta |
269 |
Q |
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| T |
37921457 |
tggaataacgatggctagtccaatcccattgaaagctcttgaaattgcaaccta |
37921510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 37925091 - 37925345
Alignment:
| Q |
16 |
ataccaactatgatactcaccaatgcaacaatgtgaaaagctattctccaaccaggtatgccaaagatcgatgttgaggctagcagtacagcaaagagat |
115 |
Q |
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||||||||||| | ||| | ||||||||| | |||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| | || ||| |
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| T |
37925091 |
ataccaactataacactaatcaatgcaaccagatgaaaagctattctccaaccagatatgccaaagattgatgttgaggctagtagtactgagaaaagac |
37925190 |
T |
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| Q |
116 |
taccaatgatgcttccaaggtttcctgtaagttgcagccacccaaaagccatgccacgattgctatcaacagtggagtcagcaaccagggacagaattgc |
215 |
Q |
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|||||| || ||||||||||||||||| ||||| ||||||||||| |||| ||||| |||||||||| |||||||||||||| || ||| ||||||| |
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| T |
37925191 |
caccaataatacttccaaggtttcctgttagttgtagccacccaaatgccacaccacggttgctatcaatggtggagtcagcaactagagactgaattgc |
37925290 |
T |
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| Q |
216 |
tggagcaacaatggcaagtccaatcccatttaaacctcttgaaattgccacctaa |
270 |
Q |
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|||| |||||||| |||||||| |||||||| ||||||||||||||||||||| |
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| T |
37925291 |
tggaattacaatggctagtccaatgccatttaatcctcttgaaattgccacctaa |
37925345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 136 - 270
Target Start/End: Complemental strand, 26286902 - 26286768
Alignment:
| Q |
136 |
tttcctgtaagttgcagccacccaaaagccatgccacgattgctatcaacagtggagtcagcaaccagggacagaattgctggagcaacaatggcaagtc |
235 |
Q |
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||||| || ||||| ||||| ||||||||||||||||||||| ||||| |||| ||||| ||||| |||||| ||||||| |||| |||| ||||| | |
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| T |
26286902 |
tttccggttagttgaagccatccaaaagccatgccacgattgttatcatcagtagagtctgcaactagggactgaattgcaggagttacaagtgcaagac |
26286803 |
T |
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| Q |
236 |
caatcccatttaaacctcttgaaattgccacctaa |
270 |
Q |
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||||||||||||| |||| ||||| ||| |||||| |
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| T |
26286802 |
caatcccatttaatcctcgtgaaactgctacctaa |
26286768 |
T |
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