View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3247_high_6 (Length: 245)
Name: NF3247_high_6
Description: NF3247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3247_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 12175852 - 12175694
Alignment:
| Q |
19 |
ccaccatagccaccaccccagcctccacgccatggacctccccaaccgtagcctccacgccatggaccgccataaccccaacctccacgccatggaccgc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12175852 |
ccaccatagccaccaccccagcctccacgccatggacctccccaaccgtagcctccacgccatggaccgccataaccccaacctccacgccatggaccgc |
12175753 |
T |
|
| Q |
119 |
cgtaaccccaacctccataatagccatacttgctttcgtctatcccattttctttacct |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12175752 |
cgtaaccccaacctccataatagccatacttgctttcgtctatcccattttctttacct |
12175694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 12183357 - 12183197
Alignment:
| Q |
19 |
ccaccatagccaccaccccagcctccacgccatggacctccccaaccgtagcctccacgccatggaccgccataaccccaacctccacgccatggaccgc |
118 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||||||||||||||||| ||| | |||||||||||| | || |||||||||||||||||||||||||| | |
|
|
| T |
12183357 |
ccaccatagccatcaccaaagccgccacgccatggacctccccaaccatagtcaccacgccatggatcaccgtaaccccaacctccacgccatggaccac |
12183258 |
T |
|
| Q |
119 |
cgtaaccccaacctccataatagccatacttgctttcgtctatcccattttctttacctac |
179 |
Q |
| |
|
|||||||| ||||||||| |||| |||| |||||||| || | ||||||| ||||| |||| |
|
|
| T |
12183257 |
cgtaacccaaacctccatcatagtcatatttgctttcatcgaccccatttgctttatctac |
12183197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 12189088 - 12188930
Alignment:
| Q |
19 |
ccaccatagccaccaccccagcctccacgccatggacctccccaaccgtagcctccacgccatggaccgccataaccccaa------cctccacgccatg |
112 |
Q |
| |
|
|||||||| ||||| ||||| || |||||||||||||||||||| || ||||| ||||||||||||||||| ||||||||| || |||||||| | |
|
|
| T |
12189088 |
ccaccataaccacctccccatccgccacgccatggacctccccatccatagccgccacgccatggaccgccgtaaccccaaccatagccgccacgccaag |
12188989 |
T |
|
| Q |
113 |
gaccgccgtaaccccaacctccataatagccatacttgctttcgtctatcccattttcttta |
174 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| |||||||| |||| ||||||| ||||| |
|
|
| T |
12188988 |
gaccaccgtaaccccaacctcc---atagccatatttgctttcatctaccccatttgcttta |
12188930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University