View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3247_high_8 (Length: 209)
Name: NF3247_high_8
Description: NF3247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3247_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 42133869 - 42133694
Alignment:
| Q |
14 |
aagaatatcataggggagttgaactatagctaacnnnnnnnngaagctacaacaagtaccacctattgaggaaaaaagaagagatcttggatccaaacga |
113 |
Q |
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| T |
42133869 |
aagaatatcataggggagttgaactatagctaacaaaaaaaagaagctacaacaagtaccacctattgaggaaaaaagaagagatcttggatccaaacga |
42133770 |
T |
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| Q |
114 |
aaaggactaggattctaggaaatttaggaggaagggaaggaccactcttaattaattgaagtggatgggaaggata |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42133769 |
aaaggactaggattctaggaaatttaggaggaagggaaggaccactcttaattaattgaagtggatgggaaggata |
42133694 |
T |
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