View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3247_low_4 (Length: 324)
Name: NF3247_low_4
Description: NF3247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3247_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 128 - 309
Target Start/End: Complemental strand, 38092136 - 38091955
Alignment:
| Q |
128 |
aatacaattcttgcggtgcctccgtggttcgtcccaactcccaaggacagaggattagagtgaatatgtacatacactcatccaaattgggccctgtatc |
227 |
Q |
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| T |
38092136 |
aatacaattcttgcggtgcctccgtggttcgtcccaactcccaaggacagaggattagagtgaatatgtacatacactcatccaaattgggccctgtatc |
38092037 |
T |
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| Q |
228 |
aaacatctgagagtatagctaaatcgttctccaaatggtcatctactatgaagggtaggctgacacagtgacatagccatac |
309 |
Q |
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| T |
38092036 |
aaacatctgagagtatagctaaatcgttctccaaatggtcatctactatgaagggtaggctgacacagtgacatagccatac |
38091955 |
T |
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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 38092379 - 38092292
Alignment:
| Q |
44 |
gatttaaatttttaatcaaatatagtagccttatttaactttctttttacttggatgttttcattagtttactaatgtaagtttaata |
131 |
Q |
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| T |
38092379 |
gattcaaatttttaatcaaatatagtagccttatttaaattttcttttacttggatagtttcattagtttactaatctaagtttaata |
38092292 |
T |
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