View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3247_low_5 (Length: 301)
Name: NF3247_low_5
Description: NF3247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3247_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 31786741 - 31786886
Alignment:
| Q |
18 |
acatattttattcatctatgtatccatcattatacacctcatatatagatacatgaggtgataagatatgttacatacgaaccaactcactcaaaaacaa |
117 |
Q |
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| T |
31786741 |
acatattttattcatctatgtatccatcattatacacctcatatatagatacatgaggtgataagatatgttacatacgaaccaactcactcaaaaacaa |
31786840 |
T |
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| Q |
118 |
aagtttaaaatacaccaatacacacacatatttattctactgattg |
163 |
Q |
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| T |
31786841 |
aagtttaaaatacatcaatacacacacacatttattctactgattg |
31786886 |
T |
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Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 212 - 296
Target Start/End: Original strand, 31786935 - 31787019
Alignment:
| Q |
212 |
gtctagtgtccttgtccatgtccagtacatgatccggtaccaggaagcttctccttaatcttctccatgatccctttcttctcac |
296 |
Q |
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| T |
31786935 |
gtctagtgtccttgtccatgtccagtacatgatccggtaccaggaagcttctccttaatcttctccatgatccctttcttctcac |
31787019 |
T |
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