View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_high_13 (Length: 363)
Name: NF3248_high_13
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 344
Target Start/End: Complemental strand, 14165879 - 14165544
Alignment:
| Q |
10 |
aagaatattggatggtcaatcaagattggtgtcaatgattctcaaatcatgaggttcaaagtgtgcatcatgtattttgattttgataaaggtaagtaag |
109 |
Q |
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| T |
14165879 |
aagaagattggatggtcaatcaagattggtgtcaatgattctcaaatcaagaggttcaaagtgtgcatcatgtattttgattttgataaaggtaactaag |
14165780 |
T |
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| Q |
110 |
aannnnnnnnnnnncaccaaagnnnnnnn-tcctcgaattaatcgtcctatgtgacaatgaccttgtacccaaaaactactaaaataataagccaaacaa |
208 |
Q |
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| T |
14165779 |
aattttttatttttcaccaaagaaaaaaaatcctcgaattaatcgtcctatgtgacaatgaccttgtacccaaaaactactaaaataataagccaaacaa |
14165680 |
T |
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| Q |
209 |
ggaaggtgtcaatgcaaaactaaccaaacaagagaaacgtcattttacaatccttcagaaggccacatgttggaatcatgcaagtttaatggtaattatt |
308 |
Q |
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| T |
14165679 |
ggaaggtgtcaatgcaaaactaaccaaacaagagaaacgtcattttacaatccttcagatggccacatgttggaatcatgcaagtttaatggtaattatt |
14165580 |
T |
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| Q |
309 |
aagtacaagaattggtgtttgtatatgacaggccta |
344 |
Q |
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| T |
14165579 |
atgtacaagaattggtgtttgtatatgacaggccta |
14165544 |
T |
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