View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_high_18 (Length: 286)
Name: NF3248_high_18
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 167
Target Start/End: Original strand, 30201435 - 30201532
Alignment:
| Q |
69 |
ctaagcaatagatctaaatttatgtccacgttattcttttgtctttttcttaaaatgtgtaacaatttaaacagatagttgttatcatgtatattatta |
167 |
Q |
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| T |
30201435 |
ctaagcaatagatctaaatttctgtccacgttatt-ttttgtctttttcttaaaatgtgtaacaatttaaacagatagttgttatcaagtatattatta |
30201532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 30201279 - 30201333
Alignment:
| Q |
13 |
aaaataataataaatttgctaagcagcatgtcgtatcaaaaaatccattcgattt |
67 |
Q |
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| T |
30201279 |
aaaataataataaatttgctaagcagcatgtcgtatctaaaaatccattcgattt |
30201333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 27991174 - 27991221
Alignment:
| Q |
28 |
ttgctaagcagcatgtcgtatcaaaaaatccattcgatttgctaagca |
75 |
Q |
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| T |
27991174 |
ttgctaagcagcatgttgtatctaaaaatccattcgatttgctaagca |
27991221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 28077707 - 28077754
Alignment:
| Q |
28 |
ttgctaagcagcatgtcgtatcaaaaaatccattcgatttgctaagca |
75 |
Q |
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| T |
28077707 |
ttgctaagcagcatgttgtatctaaaaatccattcgatttgctaagca |
28077754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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