View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_high_2 (Length: 625)
Name: NF3248_high_2
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 527; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 54 - 620
Target Start/End: Original strand, 39758149 - 39758715
Alignment:
| Q |
54 |
aagttcattttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttcctta |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39758149 |
aagttcattttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttcctta |
39758248 |
T |
|
| Q |
154 |
tccattaatttctccttcaactcctcaatttcggatttctttctatccaattcggattccctctgattcgattctgatttcatcctttcaatcaactcgt |
253 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39758249 |
tccatcaatttctccttcaactcctcaattttggatttctttctatccaattcggattccctctgattcgattctgatttcatcctttcaatcaactcgt |
39758348 |
T |
|
| Q |
254 |
aagcattcattatcttcattgtgttctgaatcttttcctcctgtaatttggtttcaccaacctcaattgcagacctaagtagttcaacctcagacctcaa |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
39758349 |
aagcattcattatcttcattgtgttctgaatcttttcctcctgtaatttagtttcaccaatctcaattgcagacctaagtagttcaacctcaaacctcaa |
39758448 |
T |
|
| Q |
354 |
agaatgaaactcgatttcaatgtaattcgtactatcattcttttccaatctttcagcttcaatttccaaattactatcatgtgcacggctcgatttcgcg |
453 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39758449 |
agaatgaaactcgatttcaatgtgattcgtactatcattcttttccaatctttcagcttcaatttccaaattaccatcatgtgcacggctcgatttcgcg |
39758548 |
T |
|
| Q |
454 |
tgtgttctagaatggtttgagtctaaagcggaggagttgtatctttgcacggcttttccagcattggttcatgacaactctatagttctttccgcggcct |
553 |
Q |
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| T |
39758549 |
tgtgttctagaatggtttgagtctaaagcggaggagttgtatctttgcacggattttccagcattggttcatgacaactctatagttctttccgcggcct |
39758648 |
T |
|
| Q |
554 |
cgagttgtcgcaaagtctcattcaccaaaggtcgagcctgaactgactctttgtgtcctttgattct |
620 |
Q |
| |
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| T |
39758649 |
cgagttgtcgcaaagtctcattcaccaaaggtcgagcctgaactgactctttgcgtccgttgattct |
39758715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 22 - 443
Target Start/End: Original strand, 39763853 - 39764274
Alignment:
| Q |
22 |
acatatttgtctaaccttttaagctccttgttaagttcattttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattct |
121 |
Q |
| |
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||||||| ||||||||||||||| ||||| |||| ||| |||||||||||||| || |||| || ||||||||||||||||||||| ||||||||| |
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| T |
39763853 |
acatattcgtctaaccttttaagttccttcttaaattctagttcttttttcgatgacagtgacacacttttttcaagcttcaaattcaacctctcattct |
39763952 |
T |
|
| Q |
122 |
catccacaatgccttgcaattcattttccttatccattaatttctccttcaactcctcaatttcggatttctttctatccaattcggattccctctgatt |
221 |
Q |
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||| |||||| |||||||| ||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||||||| | |
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| T |
39763953 |
cattcacaataccttgcaactcattttccttatccatcagtttctctttcaactcctcaatttcggctttctttctttccaattcggactccctctgact |
39764052 |
T |
|
| Q |
222 |
cgattctgatttcatcctttcaatcaactcgtaagcattcattatcttcattgtgttctgaatcttttcctcctgtaatttggtttcaccaacctcaatt |
321 |
Q |
| |
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| T |
39764053 |
caattctgattttacccgttcgatcaactcataggcattcctaatcttcaccgtgttctgaatctgttcttcttggaatttaatttcggcaatctcaatc |
39764152 |
T |
|
| Q |
322 |
gcagacctaagtagttcaacctcagacctcaaagaatgaaactcgatttcaatgtaattcgtactatcattcttttccaatctttcagcttcaatttcca |
421 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||||| |
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| T |
39764153 |
gcagacctaagtagttcaacctcagacctcaaagaacgaaactcgatttcaatgtgattagtactatcattcttttccaatctttcagattccatttcca |
39764252 |
T |
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| Q |
422 |
aattactatcatgtgcacggct |
443 |
Q |
| |
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|||| || ||||||||| |||| |
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| T |
39764253 |
aatttctgtcatgtgcaaggct |
39764274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 537 - 606
Target Start/End: Original strand, 39764332 - 39764401
Alignment:
| Q |
537 |
agttctttccgcggcctcgagttgtcgcaaagtctcattcaccaaaggtcgagcctgaactgactctttg |
606 |
Q |
| |
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|||||||| ||| ||||| ||||||||||||||||| |||||||||||| |||||||| |||||||||| |
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| T |
39764332 |
agttcttttcgctgcctcaagttgtcgcaaagtctcgttcaccaaaggttgagcctgatttgactctttg |
39764401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 39754858 - 39754895
Alignment:
| Q |
22 |
acatatttgtctaaccttttaagctccttgttaagttc |
59 |
Q |
| |
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| T |
39754858 |
acatatttgtccaaccttttaagctccttgttaagttc |
39754895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 324 - 402
Target Start/End: Original strand, 36927272 - 36927350
Alignment:
| Q |
324 |
agacctaagtagttcaacctcagacctcaaagaatgaaactcgatttcaatgtaattcgtactatcattcttttccaat |
402 |
Q |
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|||||| |||||||||| ||| ||| |||||||| |||||||||||| ||||| ||| ||||||||||| | ||||||| |
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| T |
36927272 |
agacctcagtagttcaaactcggacttcaaagaacgaaactcgatttaaatgtgattagtactatcattttcttccaat |
36927350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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