View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3248_high_23 (Length: 255)

Name: NF3248_high_23
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3248_high_23
NF3248_high_23
[»] chr6 (2 HSPs)
chr6 (16-255)||(33342818-33343057)
chr6 (16-255)||(35123855-35124094)
[»] chr7 (1 HSPs)
chr7 (24-255)||(22507845-22508077)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 33342818 - 33343057
Alignment:
Q  16 atccacggcacaggaagatggaaatagatatttgcattgttaaggctgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgctttatt 115  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33342818 atccgcggcacaggaagatggaaatagatatttgcattgttaagactgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgctttatt 33342917  T
Q  116 actagttgataaacttaattattggccaaaagaggtttcaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaaccaaat 215  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33342918 actagtcgataaacttaattattggccaaaagaggtttcaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaaccaaat 33343017  T
Q  216 aggtatggatcatggggaatctgctttacatatgggacat 255  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33343018 aggtatggatcatggggaatctgctttacatatgggacat 33343057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 35124094 - 35123855
Alignment:
Q  16 atccacggcacaggaagatggaaatagatatttgcattgttaaggctgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgctttatt 115  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35124094 atccgcggcacaggaagatggaaatagatatttgcattgttaagactgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgctttatt 35123995  T
Q  116 actagttgataaacttaattattggccaaaagaggtttcaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaaccaaat 215  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35123994 actagtcgataaacttaattattggccaaaagaggtttaaaaaatgatattaattaatttcttaatatgagtttaaagaattataattacttaaccaaat 35123895  T
Q  216 aggtatggatcatggggaatctgctttacatatgggacat 255  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35123894 aggtatggatcatggggaatctgctttacatatgggacat 35123855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 22507845 - 22508077
Alignment:
Q  24 cacaggaagatggaaatagatatttgcattgttaaggctgcaaactatatcgaaagcatacaatgggcagatggttcatggtttgcttt--attactagt 121  Q
    ||||||| |||||||||||| | |||||||| ||| || ||||| ||||| |||||||||||||  |  |||||||||||||||| |||   ||||| ||    
T  22507845 cacaggaggatggaaatagagacttgcattgctaaagccgcaaaatatattgaaagcatacaatctgatgatggttcatggtttggttttctttacttgt 22507944  T
Q  122 tgataaacttaattattggccaaaagaggtttcaaaaatgatattaattaatttcttaatatgagtttaaagaatt---ataattacttaaccaaatagg 218  Q
      | ||||||||||||    |||||| | ||||||||||  ||||  |||||||  |||| |||||||||| | ||   ||||||  ||||| || ||||    
T  22507945 ccacaaacttaattatgcaacaaaagggatttcaaaaat--tatt--ttaattttataatgtgagtttaaacatttgtaataattcattaacgaactagg 22508040  T
Q  219 tatggatcatggggaatctgctttacatatgggacat 255  Q
    || |||||||||||||| |||||||||||||||||||    
T  22508041 tacggatcatggggaatttgctttacatatgggacat 22508077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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