View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_high_25 (Length: 251)
Name: NF3248_high_25
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_high_25 |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 11663764 - 11663531
Alignment:
| Q |
17 |
tttgtgataaattgataatgccttaagtcgcctattattgagtgctccggtactagattgcaaccttactgcattgtcatgttcctttctttttgattct |
116 |
Q |
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| T |
11663764 |
tttgtgataaactgataatgccttaagttgcctattattgagtgctccggtactagattgcaaccttactgcattgtcatgttcctttctttttgattct |
11663665 |
T |
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| Q |
117 |
gaaccttccatagaagaaaattgctcttctcccatcacattttacccgcctcataccaaaattcccaaactatcccccgtgtgagtcaactcacgtggtg |
216 |
Q |
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| T |
11663664 |
gaaccttctatagaagaaaattgctcttctcccatcacattttactcgtctcataccaaaattcccaaacta-cccccgtgtgagtcaactcacgcagtg |
11663566 |
T |
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| Q |
217 |
atatggtaactatgttcgtatttctgaagggattc |
251 |
Q |
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| T |
11663565 |
atatggtatctatgtttgtattactgaagggattc |
11663531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 11663012 - 11663045
Alignment:
| Q |
131 |
agaaaattgctcttctcccatcacattttacccg |
164 |
Q |
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| T |
11663012 |
agaaaattgctcttctcccatcacattttgcccg |
11663045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 68 - 251
Target Start/End: Original strand, 21695217 - 21695401
Alignment:
| Q |
68 |
actagattgcaaccttactgcattgtcatgttcctttctttttgattctgaaccttcc-atagaagaaaattgctcttctcccatcacattttacccgcc |
166 |
Q |
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| T |
21695217 |
actagattgcaaccttactgcattgtcatgttcctttctttttgattctgaaccttcccatagaagaaaattgctcttctcccatcacattttatccgtc |
21695316 |
T |
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| Q |
167 |
tcataccaaaattcccaaactatcccccgtgtgagtcaactcacgtggtgatatggtaactatgttcgtatttctgaagggattc |
251 |
Q |
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| T |
21695317 |
tcataccaaaattcccaaactaccccccgcgtgagtcaactcacgtggtgatatggtagctatgtttgtattactgaagggattc |
21695401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 21695114 - 21695158
Alignment:
| Q |
16 |
gtttgtgataaattgataatgccttaagtcgcctattattgagtg |
60 |
Q |
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| T |
21695114 |
gtttgtgataaactgataatgccttaagtcgcctattattgagtg |
21695158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 2377162 - 2377234
Alignment:
| Q |
138 |
tgctcttctcccatcacattttacccgcctcataccaaaattcccaaactatcccccgtgtgagtcaactcacg |
211 |
Q |
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| T |
2377162 |
tgctcttctcccatcacattttgctcgcttcaaaccaaacttcccaaaata-cccctgcgtgagttaactcacg |
2377234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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