View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3248_high_35 (Length: 235)
Name: NF3248_high_35
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_high_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2122233 - 2122011
Alignment:
| Q |
1 |
atacggttaatcttgatatatgtatatacttgttttctaattatatgtatcaacaaaaaatggtagtgatttctcaaccaaccaaaaacaaaggaaaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2122233 |
atacggttaatcttgatatatgtatatacttgttttctaattatatgtatcaacaaaaaatggtagtgatttctcaaccaaccaaaaacaaaggaaaaag |
2122134 |
T |
|
| Q |
101 |
aacgtatgaatttgatattttgtaatatgatatttaattactgtattgcatagatctatgtagctaacatgttaattatataagtgatatagaaagcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2122133 |
aacgtatgaatttgatattttgtaatatgatatttaattactgtattgcatagatctatgtagctaacatgttaattatataagtgatatagaaagcaaa |
2122034 |
T |
|
| Q |
201 |
gataaggatatcatatgatattt |
223 |
Q |
| |
|
||| | ||||||||||||||||| |
|
|
| T |
2122033 |
gatgaagatatcatatgatattt |
2122011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University