View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_low_10 (Length: 402)
Name: NF3248_low_10
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 23 - 390
Target Start/End: Complemental strand, 34426191 - 34425823
Alignment:
| Q |
23 |
cgccacataaactactgcttttctcgaccaataacaatatatcaattattatgttactcattcagtgtgttttgtcttgcatttcaggcgatggttataa |
122 |
Q |
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| T |
34426191 |
cgccacataaactactgcttttctcgaccaataacaatatatcaattattatgttactcattcagtgtgttttgtcttgcatttcaggtgatggttataa |
34426092 |
T |
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| Q |
123 |
ggtattagtgaacatgctaaaatatattggtcccactcatatagttaagataggcatatccactgatctgaagaatttacctgttggaaagttcgggtca |
222 |
Q |
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| T |
34426091 |
ggtattagtgaacatgctaaaatatattggtcccactcatatagttaagataggcatatccactgatctgaagaatatacctgttggaaagttcgggtca |
34425992 |
T |
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| Q |
223 |
aatgggaagaatgacagaagagttaaattgattgagatatatccagctcgtcaggactcatcgtaagcccaaatgttatatgttaccattttcagctgct |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34425991 |
aatgggaagaatgacagaagagttaaattgattgagatatatccagctcgtcaggactcatcgtaagcccaaatgttatatgttaccattttcagctgct |
34425892 |
T |
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| Q |
323 |
agtttatttcaatattttttagactt-aaagtattatagaataacagaatatccctacttgtttcccta |
390 |
Q |
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| T |
34425891 |
agtttatttcaatattttttagacttaaaagtattatagaataacaaaatatccctacttgtttcccta |
34425823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 34419038 - 34418880
Alignment:
| Q |
27 |
acataaactactgcttttctcgaccaataacaatatatcaattattatgttactcattcagtgtgttttgtcttgcatttcaggcgatggttataaggta |
126 |
Q |
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||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| | ||| |
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| T |
34419038 |
acataaactactgctttcctggac---taacaacatatcaattattatgttactcattcagttggttttgtcttgcatttcaggtgttggttatgaagta |
34418942 |
T |
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| Q |
127 |
ttagtgaacatgctaaaatatattggtcccactcatatagttaagataggcatatccactga |
188 |
Q |
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|||||| ||||||||||||||||||||||||||||| | |||||||||| | |||||||||| |
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| T |
34418941 |
ttagtggacatgctaaaatatattggtcccactcatgttgttaagatagacttatccactga |
34418880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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