View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_low_11 (Length: 391)
Name: NF3248_low_11
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 289
Target Start/End: Complemental strand, 30697893 - 30697607
Alignment:
| Q |
5 |
agtgagatgaagtctagagaactataatcttttgagcaaaagaatgcatcaaatgttagttgttccattgtcgggttagttaaagacttttcataattta |
104 |
Q |
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| T |
30697893 |
agtgacataaagtctagagaactataatcttttgagaaaaagaatgcatcaaatgttagttgttccatagctgggttagttaaagacttttcataattta |
30697794 |
T |
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| Q |
105 |
tcattcagggaaattcgttacttttctattgaattacaagtatattagtttgagtacaaacaaaa-ttcaagtttgggttgtgatgataagaaatcatat |
203 |
Q |
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||||| ||| | ||| |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30697793 |
tcattaaggaagatttgttatttttctattgaattacaagtatattagtttgagtataaacaaaagttcaagtttgggttgtgatgataagaaatcatat |
30697694 |
T |
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| Q |
204 |
agggtttttagtggctttttagagtcattttagagtaaaagtggcaagttttattgca-tttagtagagtttattttcaggattcgt |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||| |
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| T |
30697693 |
agggtttttagtggctttttagagtcattttagagtaaaagtagcaagttttattgcattttagtagagtttctttaaaggattcgt |
30697607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 19545781 - 19545827
Alignment:
| Q |
193 |
agaaatcatatagggtttttagtggctttttagagtcattttagagt |
239 |
Q |
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| T |
19545781 |
agaaatcatataggattttcagtctctttttagagtcattttagagt |
19545827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 9027568 - 9027629
Alignment:
| Q |
193 |
agaaatcatatagggtttttagtggctttttagagtcattttagagtaaaagtggcaagttt |
254 |
Q |
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| T |
9027568 |
agaaatcatatagggtttttagtgtcattttagaatcatgttaaagttcaagtagcaagttt |
9027629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 1594088 - 1594146
Alignment:
| Q |
185 |
tgatgataagaaatcatatagggtttttagtggctttttagagtcattttagagtaaaa |
243 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||| | |||||||||||||| |
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| T |
1594088 |
tgatgacaagaaatcatatagggtttttagtgtctttttagatttattttagagtaaaa |
1594146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 16371185 - 16371125
Alignment:
| Q |
185 |
tgatgataagaaatcatatagggtttttagtggctttttagagtcattttagagtaaaagt |
245 |
Q |
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|||| ||| ||||||| |||||||||||| || |||||||||||||||||||||||||||| |
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| T |
16371185 |
tgataataggaaatcaaatagggtttttaatgtctttttagagtcattttagagtaaaagt |
16371125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 12554660 - 12554719
Alignment:
| Q |
195 |
aaatcatatagggtttttagtggctttttagagtcattttagagtaaaagtggcaagttt |
254 |
Q |
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|||||||||||||||||| || ||||||||||||| |||| ||||||||| || ||||| |
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| T |
12554660 |
aaatcatatagggtttttggttcctttttagagtcaatttaaagtaaaagtagctagttt |
12554719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 4962993 - 4962924
Alignment:
| Q |
185 |
tgatgataagaaatcatatagggtttttagtggctttttagagtcattttagagtaaaagtggcaagttt |
254 |
Q |
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|||||| | ||| ||||||| | |||| |||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
4962993 |
tgatgacatgaagtcatataagattttaagtgtctttttagagtcattttagggtaaaagtggcaagttt |
4962924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 30919686 - 30919626
Alignment:
| Q |
194 |
gaaatcatatagggtttttagtggctttttagagtcattttagagtaaaagtggcaagttt |
254 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||| ||||| || ||||| |
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| T |
30919686 |
gaaatcatatagggtttttagctcctttttagtatcattttagagttaaagtagctagttt |
30919626 |
T |
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