View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_low_12 (Length: 367)
Name: NF3248_low_12
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 154 - 351
Target Start/End: Original strand, 17722726 - 17722923
Alignment:
| Q |
154 |
ctattaattatcaatatgtgaatgcagacttttccagtttatcttatataacattattggccttttcacacaattaagagttgtaagaagcaaagtttct |
253 |
Q |
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| T |
17722726 |
ctattaattataaatatgtgaatgcagacttttccagtttatcttatataacattattggccttttcacacaattaagagttgtaagaagcaaagttcct |
17722825 |
T |
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| Q |
254 |
ccacaaaacctataacattgactgatatgctgttaaaatttgcggcttgaaaatcaaattttggatcgacaaatgggtaagtttggagccattcatgc |
351 |
Q |
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| T |
17722826 |
ccacaaaacctataacattgactgatatgctgttaaaatttgcggcttgaaaatcaaattttggatcgacaaatgggtaaatttggagccattcatgc |
17722923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 154 - 351
Target Start/End: Original strand, 19023955 - 19024152
Alignment:
| Q |
154 |
ctattaattatcaatatgtgaatgcagacttttccagtttatcttatataacattattggccttttcacacaattaagagttgtaagaagcaaagtttct |
253 |
Q |
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| T |
19023955 |
ctattaattataaatatgtgaatgcagacttttccagtttatcttatataacattattggccttttcacacaattaagagttgtaagaagcaaagttcct |
19024054 |
T |
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| Q |
254 |
ccacaaaacctataacattgactgatatgctgttaaaatttgcggcttgaaaatcaaattttggatcgacaaatgggtaagtttggagccattcatgc |
351 |
Q |
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| T |
19024055 |
ccacaaaacctataacattgactgatatgctgttaaaatttgcggcttgaaaatcaaattttggatcgacaaatgggtaaatttggagccattcatgc |
19024152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 155 - 351
Target Start/End: Complemental strand, 18114219 - 18114035
Alignment:
| Q |
155 |
tattaattatcaatatgtgaatgcagacttttccagtttatcttatataacattattggccttttcacacaattaagagttgtaagaagcaaagtttctc |
254 |
Q |
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| T |
18114219 |
tattaattatcaatatgtgaatgcagacttctccattttatcttatataacaatattggccttttcacacaattaagagttgtaagaagcaaagtttgac |
18114120 |
T |
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| Q |
255 |
-cacaaaacctataacattgactgatatgctgttaaaatttgcggcttgaaaatcaaattttggatcgacaaatgggtaagtttggagccattcatgc |
351 |
Q |
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| T |
18114119 |
tcacgga-------------actgatatgctgttaaaatttgcggctagaaaattaaattttggatcgacggatgggtaaaattggagccattcatgc |
18114035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 18114329 - 18114263
Alignment:
| Q |
55 |
taatacgaagatttta-tactaaatattatcaccattgatatttgatacaggcgctagattaccata |
120 |
Q |
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| T |
18114329 |
taatatgaagattttaatactaaatattatcaccattgatatttgatacaggcgctagattatcata |
18114263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 17711568 - 17711641
Alignment:
| Q |
216 |
ttttcacacaattaagagttgtaagaagcaaagtttctccacaaaacctataacattgactgatatgctgttaa |
289 |
Q |
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| T |
17711568 |
ttttcacatatttaagagttgcaagaagcaaagtttctccacaaatcatttaacattgactgatatactgttaa |
17711641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 19012825 - 19012898
Alignment:
| Q |
216 |
ttttcacacaattaagagttgtaagaagcaaagtttctccacaaaacctataacattgactgatatgctgttaa |
289 |
Q |
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| T |
19012825 |
ttttcacatatttaagagttgcaagaagcaaagtttctccacaaatcatttaacattgactgatatactgttaa |
19012898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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