View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_low_14 (Length: 352)
Name: NF3248_low_14
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 38404320 - 38403979
Alignment:
| Q |
11 |
cagagagagtggtaacaattccagcaacatagagaaccataatcaatccaataacccatggcatcaaaacaaagccaataaagaacgtgaccgatccaca |
110 |
Q |
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| T |
38404320 |
cagagagagtggtaacaattccagcaacatagagaaccataatcaatccaataacccatggcatcaaaacaaacccaataaagaacgtgacagatccaca |
38404221 |
T |
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| Q |
111 |
gagcatcaaagccatcgaaattcccagaagaagggaggcaaaacccgcgggtgagatttgaggtggaggtaaacgccgtaacggttgctccggtggatga |
210 |
Q |
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| T |
38404220 |
gagcatcaaagccatcgaaattcccagaagaagggaggcaaaacccgcgggtgagatttgaggtggaggtaaacgccgtaacggttgctccggtggatga |
38404121 |
T |
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| Q |
211 |
ttggagaaattcaacggcgttggtggtgagcggaggaggttgagaaggattgcagataggtcgtagaaagctcgtgattgttcatcttcacgtgttcttc |
310 |
Q |
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| T |
38404120 |
ttggagaaattcaacggcgttggtggtgagcggaggaggttgagaaggattgcagataggtcgtagaaagcacgtgattgttcatcttcacgtgttcttc |
38404021 |
T |
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| Q |
311 |
tcatcatcttggttgaaacagagagagtactatggtttatgt |
352 |
Q |
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| T |
38404020 |
tcatcatcttggttgaaacagagagagtactatggtttatgt |
38403979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 71 - 320
Target Start/End: Original strand, 33529945 - 33530183
Alignment:
| Q |
71 |
gcatcaaaacaaagccaataaagaacgtgaccgatccacagagcatcaaagccatcgaaattcccagaagaagggaggcaaaacccgcgggtgagatttg |
170 |
Q |
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| T |
33529945 |
gcatcaaaacaaacccaataaagaacgtgactgatccgcaaaacatcaaagccatcgaaattcctagaagaaaggaggcaaaacccgcaggtgagatttg |
33530044 |
T |
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| Q |
171 |
aggtggaggtaaacgccgtaacggttgctccggtggatgattggagaaattcaacggcgttggtggtgagcggaggaggttgagaaggattgcagatagg |
270 |
Q |
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| T |
33530045 |
aggtggaggtaaacgccgtaacggttgctccggtggatgattggaaatattcaacggcattggtggtgaacgggggaggttgagaacgattgc------- |
33530137 |
T |
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| Q |
271 |
tcgtagaaagctcgtgattgttcatcttcacgtgttcttctcatcatctt |
320 |
Q |
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| T |
33530138 |
----agagagctcgtgattgttcatcttcacgtgttcttctcatcatctt |
33530183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 71 - 320
Target Start/End: Complemental strand, 16871402 - 16871164
Alignment:
| Q |
71 |
gcatcaaaacaaagccaataaagaacgtgaccgatccacagagcatcaaagccatcgaaattcccagaagaagggaggcaaaacccgcgggtgagatttg |
170 |
Q |
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| T |
16871402 |
gcatcaaaacaaacccaataaagaacgtgactgatccgcaaaacatcaaagccatcgaaattcctagaagaaaggaggcaaaacccgcaggtgagatttg |
16871303 |
T |
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| Q |
171 |
aggtggaggtaaacgccgtaacggttgctccggtggatgattggagaaattcaacggcgttggtggtgagcggaggaggttgagaaggattgcagatagg |
270 |
Q |
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| T |
16871302 |
aggtggaggtaaacgccgtaacggttgctccggtggatgattggaaatattcaacggcattggtggtgaacgggggaggttgagaacgattgc------- |
16871210 |
T |
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| Q |
271 |
tcgtagaaagctcgtgattgttcatcttcacgtgttcttctcatcatctt |
320 |
Q |
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| T |
16871209 |
----agagagctcgtgattgttcatcttcacgtgttcttctcatcatctt |
16871164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 34808735 - 34808843
Alignment:
| Q |
31 |
ccagcaacatagagaaccataatcaatccaataacccatggcatcaaaacaaagccaataaagaacgtgaccgatccacagagcatcaaagccatcgaaa |
130 |
Q |
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||||||||||| | ||||||| ||||||||||||||| |||||||| | ||| ||||| | ||| || ||||||||||| ||||||||||||| ||||| |
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| T |
34808735 |
ccagcaacataaaacaccataaccaatccaataacccacggcatcaacataaacccaatcacgaaagtaaccgatccacacagcatcaaagccaccgaaa |
34808834 |
T |
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| Q |
131 |
ttcccagaa |
139 |
Q |
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| T |
34808835 |
tccccagaa |
34808843 |
T |
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