View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3248_low_17 (Length: 338)

Name: NF3248_low_17
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3248_low_17
NF3248_low_17
[»] chr7 (12 HSPs)
chr7 (24-322)||(11814041-11814345)
chr7 (31-322)||(11815161-11815459)
chr7 (165-322)||(11810567-11810724)
chr7 (189-314)||(11816584-11816707)
chr7 (190-322)||(11820158-11820290)
chr7 (200-322)||(11808909-11809030)
chr7 (211-322)||(11812222-11812333)
chr7 (24-149)||(11809098-11809225)
chr7 (27-149)||(11820349-11820473)
chr7 (36-148)||(11816755-11816869)
chr7 (24-67)||(11812473-11812516)
chr7 (40-136)||(27994137-27994235)
[»] chr8 (2 HSPs)
chr8 (241-322)||(44253022-44253103)
chr8 (224-320)||(44249413-44249509)
[»] chr2 (1 HSPs)
chr2 (24-79)||(41849221-41849276)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 11814345 - 11814041
Alignment:
Q  24 ttcagacatttctttgagttgtcctacaaacctcatataagtgttatgtaagtgtcaaacaccgaacctaagagtgttaagtgaagaagaaaaaacttat 123  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11814345 ttcaaacatttctttgagttgtcctacaaacctcatataagtgttatgtaagtgtcaaacaccgaacctaagagtgttaagtgaagaagaaagaacttat 11814246  T
Q  124 ttaggatacttgtccaacacgtgtcga------gtcataacaatgtggatatcgaacctagaaatgcttgtacttcatagatggttacacaattttttaa 217  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11814245 ttaggatacttgtccaacacgtgtcgtacaagtgtcataacaatgtggatatcgaacctagaaatgcctgtacttcatagatggttacacaattttttaa 11814146  T
Q  218 aatctagatcaatattttttaaaggacctcttctatgtacaattaaaatttcttttgtgtttgtgtatgtcacttaatttatagatactttataggaaga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11814145 aatctagatcaatattttttaaaggacctcttctatgtacaattaaaatttcttttgtgtttgtgtatgtcacttaatttatagatactttataggaaga 11814046  T
Q  318 aaatt 322  Q
    |||||    
T  11814045 aaatt 11814041  T

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Target: chr7; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 31 - 322
Target Start/End: Complemental strand, 11815459 - 11815161
Alignment:
Q  31 atttctttgagttgtcctacaaacctcatataagtgttatgta-agtgtcaaacaccgaacctaagagtgtt-aagtgaagaagaaaaaacttatttagg 128  Q
    |||| ||||||||||||||||||| |||||||||||||||||| ||||||| ||||| ||||||| |||||| || | ||||||||| ||||||||||||    
T  11815459 atttatttgagttgtcctacaaac-tcatataagtgttatgtatagtgtcagacaccaaacctaatagtgttgaaataaagaagaaataacttatttagg 11815361  T
Q  129 atacttgtccaacacgtgtcga------gtcataacaatgtggatatcgaacctagaaatgcttgtacttcatagatggttacacaattttttaaaatct 222  Q
    ||||||||||||||| |||||       ||||||  | |||||||| | |||||  |||||| ||| ||||||||| |||||||||||||||||||||||    
T  11815360 atacttgtccaacacttgtcgtacaagtgtcatacgagtgtggataccaaacctgtaaatgcatgtgcttcatagacggttacacaattttttaaaatct 11815261  T
Q  223 agatcaatattttttaaaggacctcttctatgtacaattaaaatttcttttgtgtttgtgtatgtcacttaatttatagatactttataggaagaaaatt 322  Q
    ||||| ||||||||||| |||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  11815260 agatcgatattttttaagggacctctactatgtacaattcaaatttcttttgtctttgtgtgtgtcacttaatttatagatactttataggaagaaaatt 11815161  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 165 - 322
Target Start/End: Complemental strand, 11810724 - 11810567
Alignment:
Q  165 gatatcgaacctagaaatgcttgtacttcatagatggttacacaattttttaaaatctagatcaatattttttaaaggacctcttctatgtacaattaaa 264  Q
    ||||||| |||||||| ||  |||  |||||||| |||||||||||||||| |||||  |||| |||||||||| || ||||||||| ||||||||| ||    
T  11810724 gatatcgtacctagaagtgtatgtgattcatagaaggttacacaatttttttaaatcatgatcgatattttttagagaacctcttctttgtacaattcaa 11810625  T
Q  265 atttcttttgtgtttgtgtatgtcacttaatttatagatactttataggaagaaaatt 322  Q
    ||||||||| ||||||||  |||||| || ||||| ||||||||||| ||||||||||    
T  11810624 atttcttttttgtttgtgagtgtcacctattttattgatactttatatgaagaaaatt 11810567  T

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Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 189 - 314
Target Start/End: Complemental strand, 11816707 - 11816584
Alignment:
Q  189 acttcatagatggttacacaattttttaaaatctagatcaatattttttaaaggacctcttctatgtacaattaaaatttcttttgtgtttgtgtatgtc 288  Q
    ||||||||| ||||||||||||||   ||||||| |||| ||||||||||  | || |||||||||||||||| ||||||| ||| ||||||||| ||||    
T  11816707 acttcatagttggttacacaatttc--aaaatcttgatcgatattttttagggaacttcttctatgtacaattcaaatttcatttttgtttgtgtgtgtc 11816610  T
Q  289 acttaatttatagatactttatagga 314  Q
    ||||||||||||||||||||||||||    
T  11816609 acttaatttatagatactttatagga 11816584  T

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Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 190 - 322
Target Start/End: Complemental strand, 11820290 - 11820158
Alignment:
Q  190 cttcatagatggttacacaattttttaaaatctagatcaatattttttaaaggacctcttctatgtacaattaaaatttcttttgtgtttgtgtatgtca 289  Q
    ||||| ||||||||||||||||||||||||||  |||| |||| |||||  ||||||| ||||| || |||| ||||| | ||| |||||||||  | ||    
T  11820290 cttcacagatggttacacaattttttaaaatcatgatcgatatcttttaggggacctcgtctatataaaattcaaattacatttttgtttgtgtgcgcca 11820191  T
Q  290 cttaatttatagatactttataggaagaaaatt 322  Q
    |||||||||||||||||||||||||||||||||    
T  11820190 cttaatttatagatactttataggaagaaaatt 11820158  T

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Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 200 - 322
Target Start/End: Complemental strand, 11809030 - 11808909
Alignment:
Q  200 ggttacacaattttttaaaatctagatcaatattttttaaaggacctcttctatgtacaattaaaatttcttttgtgtttgtgtatgtcacttaatttat 299  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |||| |  ||| || ||| || |||||||||||||||    
T  11809030 ggttacacaattttttaaaatcttgatcgatattttttaagggacctcttctatgtacaattcaaatattgtttttgattgagtgtgtcacttaatttat 11808931  T
Q  300 agatactttataggaagaaaatt 322  Q
    | || || |||||||||||||||    
T  11808930 aaat-ctatataggaagaaaatt 11808909  T

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Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 211 - 322
Target Start/End: Complemental strand, 11812333 - 11812222
Alignment:
Q  211 tttttaaaatctagatcaatattttttaaaggacctcttctatgtacaattaaaatttcttttgtgtttgtgtatgtcacttaatttatagatactttat 310  Q
    |||||||||||| |||| ||||||||||  ||| ||||||||||||||||| ||||||||||| ||||||  | |||||| ||||||||||||| | |||    
T  11812333 tttttaaaatcttgatcgatattttttaggggatctcttctatgtacaattcaaatttcttttttgtttgcttgtgtcacctaatttatagatattgtat 11812234  T
Q  311 aggaagaaaatt 322  Q
    ||||||||||||    
T  11812233 aggaagaaaatt 11812222  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 11809225 - 11809098
Alignment:
Q  24 ttcagacatttctttgagttgtcctacaaacctcatataagtgttatgtaagtgtcaaacaccgaacctaagagtgt-taagtgaagaagaaaa-aactt 121  Q
    |||| |||||| |||||||||||  ||| |||||||||||||||||| |||| || | |||||||||||| || |||  |||| |||||||||| |||||    
T  11809225 ttcatacatttgtttgagttgtctgacacacctcatataagtgttatataagcgttagacaccgaacctaggaatgtcaaagtaaagaagaaaataactt 11809126  T
Q  122 atttaggatacttgtccaacacgtgtcg 149  Q
     |||| || |||||||| |||| |||||    
T  11809125 gtttatgacacttgtccgacacatgtcg 11809098  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 11820473 - 11820349
Alignment:
Q  27 agacatttctttgagttgtcctacaaacctcatataagtgttatgtaagtgtcaaacaccgaacctaagagtg-ttaagtgaagaagaaaa-aacttatt 124  Q
    |||||||  |||||||||||  ||| |||||| ||||||||||| ||  ||||| ||||||| ||||||||||   |||| |||||||||| ||||||||    
T  11820473 agacattattttgagttgtctgacacacctcaaataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatt 11820374  T
Q  125 taggatacttgtccaacacgtgtcg 149  Q
    ||| | |||||||  ||||||||||    
T  11820373 tagaacacttgtctgacacgtgtcg 11820349  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 11816869 - 11816755
Alignment:
Q  36 tttgagttgtcctacaaacctcatataagtgttatgtaagtgtcaaacaccgaacctaagagtgt-taagtgaagaagaaaa-aacttatttaggatact 133  Q
    |||||||||||| ||| ||||||||||||||| || ||||||||| |||| || | || ||||||  || | |||||||||| ||||||||||||| |||    
T  11816869 tttgagttgtccgacacacctcatataagtgtcatataagtgtcagacacggatcttaggagtgtcgaaataaagaagaaaataacttatttaggacact 11816770  T
Q  134 tgtccaacacgtgtc 148  Q
     |||  |||||||||    
T  11816769 cgtctgacacgtgtc 11816755  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 11812516 - 11812473
Alignment:
Q  24 ttcagacatttctttgagttgtcctacaaacctcatataagtgt 67  Q
    ||||||||||| |||||||||||| |||||||||||||| ||||    
T  11812516 ttcagacatttgtttgagttgtccgacaaacctcatatatgtgt 11812473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 27994137 - 27994235
Alignment:
Q  40 agttgtcctacaaacctcatataagtgttatgtaagtgtcaaacaccgaacctaagagtgtt-aagtgaagaagaaaa-aacttatttaggatacttgt 136  Q
    |||||||| ||| |||||||||||||||||| || || ||| ||||||  || || |||||| |||| |||||||||| |||||||||| || ||||||    
T  27994137 agttgtccaacagacctcatataagtgttatataggtatcagacaccggtccaaaaagtgttgaagtaaagaagaaaacaacttatttatgacacttgt 27994235  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 44253103 - 44253022
Alignment:
Q  241 ggacctcttctatgtacaattaaaatttcttttgtgtttgtgtatgtcacttaatttatagatactttataggaagaaaatt 322  Q
    |||| ||||||||||| |||| ||| || |||| | ||| | ||||||||||||||||||||||||||| | ||||||||||    
T  44253103 ggacttcttctatgtataatttaaagtttttttttttttttttatgtcacttaatttatagatactttagaagaagaaaatt 44253022  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 44249509 - 44249413
Alignment:
Q  224 gatcaatattttttaaaggacctcttctatgtacaattaaaatttcttttgtgtttgtgtatgtcacttaatttatagatactttataggaagaaaa 320  Q
    |||| |||||||| |  ||||||||||||| || || | ||| ||||||| ||||||||  |||||||||||||||||||| |||| | ||||||||    
T  44249509 gatcgatatttttgaggggacctcttctatttataactcaaagttcttttttgtttgtgcgtgtcacttaatttatagatattttagaagaagaaaa 44249413  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 41849221 - 41849276
Alignment:
Q  24 ttcagacatttctttgagttgtcctacaaacctcatataagtgttatgtaagtgtc 79  Q
    ||||||||||| |||||||||||| |||  ||||||||||||||||| || |||||    
T  41849221 ttcagacatttgtttgagttgtccgacacgcctcatataagtgttatataggtgtc 41849276  T

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