View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3248_low_19 (Length: 284)
Name: NF3248_low_19
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_19 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 26652922 - 26653187
Alignment:
| Q |
16 |
taaagtacaaagtataaaagaaaaatatacactaaatctaattaatatacaaacttttaacaacaaaaaattaccttacaatcaattaacacaaatccat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26652922 |
taaagtacaaagtataaaagaaaaatatacactaaatctaattaatatacaaacttttatcaacaaa---ttaccttacaatcaattaacacaaatccat |
26653018 |
T |
|
| Q |
116 |
gggaacggcgccatttgatgagcccgattgtagcaatgaagaatcaaagatttataattattagttggtagtgtttagctgattataggtgttcattgag |
215 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26653019 |
gggaacagcgccatttgatgagcccgattgtagcaatgaagaatcaaagatttataattattagttggtagtgtttagctgattataggtgtttattgag |
26653118 |
T |
|
| Q |
216 |
aaattatgagtgaaggatgaaacaaacaatagacaagttatgttgggaataggcttcattagttagttc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26653119 |
aaattatgagtgaaggatgaaacaaacaatagacaagttatgttgggaatagacttcattagttagttc |
26653187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 31930881 - 31930774
Alignment:
| Q |
177 |
tagttggtagtgtttagctgattataggtgttcattgagaaattatgagtgaaggatgaaacaaacaatagacaagttatgttgggaataggcttcatta |
276 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||| | ||||||||||| || |||||||||||||||| ||||| |||||||| || |||||| || |
|
|
| T |
31930881 |
tagttggtagtgtttagttgattgtaggtgtttattgacacattatgagtgaggggtgaaacaaacaatagaaaagttgtgttgggattaagcttcacta |
31930782 |
T |
|
| Q |
277 |
gttagttc |
284 |
Q |
| |
|
|| ||||| |
|
|
| T |
31930781 |
gtcagttc |
31930774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 18435520 - 18435571
Alignment:
| Q |
233 |
tgaaacaaacaatagacaagttatgttgggaataggcttcattagttagttc |
284 |
Q |
| |
|
||||| |||||| ||||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
18435520 |
tgaaataaacaacagacaagttgtgttgggattaagcttcattagttagttc |
18435571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 26744607 - 26744507
Alignment:
| Q |
181 |
tggtagtgtttagctgattataggtgttcattgagaaattatgagtgaaggatgaaacaaacaatagacaagttatgttgggaataggcttcattagtta |
280 |
Q |
| |
|
||||||||||| | ||||| |||||||| ||||| | | |||||||| || ||||||||||||| |||| || |||| ||| || ||||||||||||| |
|
|
| T |
26744607 |
tggtagtgtttggttgattgtaggtgtttattgatataatatgagtg--gggtgaaacaaacaatttacaatttgtgttaggattaagcttcattagtta |
26744510 |
T |
|
| Q |
281 |
gtt |
283 |
Q |
| |
|
||| |
|
|
| T |
26744509 |
gtt |
26744507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University