View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3248_low_20 (Length: 279)
Name: NF3248_low_20
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 7450780 - 7451020
Alignment:
| Q |
16 |
atcatagatcatgcaatacgaatcctaaacaatcattcataaatattacaaaaagatacttaacttcattatgcagcatacatcaattcaacatgcataa |
115 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7450780 |
atcatagatcatgcaa----aatcctaaacgatcattcataaatattagagaaaaatacttaacttcattatgcagcatacatcaattcaacatgcataa |
7450875 |
T |
|
| Q |
116 |
catcaaatacctaaaactctatgcatgattcatgatttcccccattcataaaacaaaacccccaaatcccaattaatcttagtactcgatacattaaaac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
7450876 |
catcaaatacctaaaactctatgcatgattcatgatttcccccattcataaaacaaaacccccaaatcccaatcaaacttagtactc-atacattaaaac |
7450974 |
T |
|
| Q |
216 |
tacaacatacaaatttgtcttaatagagtacaacgaatataagtat |
261 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7450975 |
taaaacatacaaatttttcttaatagagtacaacgaatataagtat |
7451020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University