View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_low_27 (Length: 250)
Name: NF3248_low_27
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_27 |
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| [»] scaffold0528 (1 HSPs) |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 31039235 - 31039474
Alignment:
| Q |
1 |
ttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccctcttagctccttcaggcatttccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31039235 |
ttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccctcttagctccttcaggcatttccc |
31039334 |
T |
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| Q |
101 |
agtcaaatgaatagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaagccggggcaaattcttcgcccagaaccaaacggaatcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31039335 |
agtcaaatgaatagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaagccggggcaaattcttcgcccagaaccaaacggaatcag |
31039434 |
T |
|
| Q |
201 |
ctcaaaatcttgtccttttaaatctatatcacttcctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
31039435 |
ctcaaaatcttgtccttttaaatctatatcacttcctatg |
31039474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 31052725 - 31052964
Alignment:
| Q |
1 |
ttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccctcttagctccttcaggcatttccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31052725 |
ttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccctcttagctccttcaggcatttccc |
31052824 |
T |
|
| Q |
101 |
agtcaaatgaatagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaagccggggcaaattcttcgcccagaaccaaacggaatcag |
200 |
Q |
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| T |
31052825 |
aatcaaatgaatagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaagccggggcaaattcttcgcccagaaccaaacggaatcag |
31052924 |
T |
|
| Q |
201 |
ctcaaaatcttgtccttttaaatctatatcacttcctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
31052925 |
ctcaaaatcttgtccttttaaatctatatcacttcctatg |
31052964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 31048458 - 31048642
Alignment:
| Q |
1 |
ttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccctcttagctccttcaggcatttccc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31048458 |
ttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccctcttagctccttcaggcatttccc |
31048557 |
T |
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| Q |
101 |
agtcaaatgaatagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaagccggggcaaattcttcgcccaga |
185 |
Q |
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| T |
31048558 |
agtcaaatgaacagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaagccggggcaaattcttcgcccaga |
31048642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 31071557 - 31071796
Alignment:
| Q |
1 |
ttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccctcttagctccttcaggcatttccc |
100 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||| |||||| | |||||| | |||| || | ||||| ||| |||||||||||||||||| |
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| T |
31071557 |
ttcttagcaataaggcagagaggatttttcttgtgttgaacaagtcctggaagaccatcaatgtctatattttcccactttactccttcaggcatttccc |
31071656 |
T |
|
| Q |
101 |
agtcaaatgaatagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaagccggggcaaattcttcgcccagaaccaaacggaatcag |
200 |
Q |
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| T |
31071657 |
aatcaaacaaatagagaagattagcaagtacaaggtccacagtagcaattgccatgtttaagccggggcaaactcttcgccccgagccaaatggaatcag |
31071756 |
T |
|
| Q |
201 |
ctcaaaatcttgtccttttaaatctatatcacttcctatg |
240 |
Q |
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||| ||||||||||||||||||||||||||||| |||||| |
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| T |
31071757 |
ctcgaaatcttgtccttttaaatctatatcactacctatg |
31071796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0528 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0528
Description:
Target: scaffold0528; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 101 - 1
Alignment:
| Q |
1 |
ttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccctcttagctccttcaggcatttccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
101 |
ttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccctcttagctccttcaggcatttccc |
2 |
T |
|
| Q |
101 |
a |
101 |
Q |
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| |
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| T |
1 |
a |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 15965 - 15900
Alignment:
| Q |
166 |
gggcaaattcttcgcccagaaccaaacggaatcagctcaaaatcttgtccttttaaatctatatca |
231 |
Q |
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||||||||||| ||||| | |||||| || |||| ||||||||| ||||||| |||||||||||| |
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| T |
15965 |
gggcaaattctacgccctgcaccaaatggtatcaactcaaaatcccgtcctttaaaatctatatca |
15900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 3630120 - 3630185
Alignment:
| Q |
166 |
gggcaaattcttcgcccagaaccaaacggaatcagctcaaaatcttgtccttttaaatctatatca |
231 |
Q |
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||||||||||| ||||| | |||||| || |||| ||||||||| ||||||| |||||||||||| |
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| T |
3630120 |
gggcaaattctacgccctgcaccaaatggtatcaactcaaaatcccgtcctttaaaatctatatca |
3630185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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