View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_low_31 (Length: 238)
Name: NF3248_low_31
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33343113 - 33343328
Alignment:
| Q |
1 |
cataagaaagggatgtgagtttttactttcaaaacagcacaagctttcaggtgggtggggtgagagctatctctcatgccaacacaaggtatatatatag |
100 |
Q |
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| T |
33343113 |
cataagaaagggatgtgagtttttactttcaaaacagcacaagctttcaggtgggtggggtgagagctatctctcatgccaacacaaggtatatatatag |
33343212 |
T |
|
| Q |
101 |
tatgaactttaaaagttctattctatccctttcagcatctatcaagcacggacacggacacggacactaataataacttgtaacaaattaacaggtatac |
200 |
Q |
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| T |
33343213 |
tatgaactttaaaagttctattctatccctttaagcatctatcaag------cacagacacggacactaataataacttgtaataaattaacaggtatac |
33343306 |
T |
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| Q |
201 |
acaaacctggaaggaaacaaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
33343307 |
acaaacctggaaggaaacaaat |
33343328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35123799 - 35123570
Alignment:
| Q |
1 |
cataagaaagggatgtgagtttttactttcaaaacagcacaagctttcaggtgggtggggtgagagctatctctcatgccaacacaaggtatatatatag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35123799 |
cataagaaagggatgtgagtttttactttcaaaacagcacaagctttcaggtgggtggggtgagagctatctctcatgccaacacaaggta----tatag |
35123704 |
T |
|
| Q |
101 |
tatgaactttaaaagttctattctatccctttcagcatctatcaagcacggacacg------------gacacggacactaataataacttgtaacaaat |
188 |
Q |
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| T |
35123703 |
tatgaactttaaaagttatattctatccctttcagcatctatcaagcacggacacggatactggacacgacacggacactaataataacttgtaacaaat |
35123604 |
T |
|
| Q |
189 |
taacaggtatacacaaacctggaaggaaacaaat |
222 |
Q |
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| T |
35123603 |
taacaggtatacacaaacctggaaggaaacaaat |
35123570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 22508271 - 22508326
Alignment:
| Q |
165 |
cactaataataacttgtaacaaattaacaggtatacacaaacctggaaggaaacaa |
220 |
Q |
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||||||||||||| | || |||||||||||||||||||||||||||||||||||| |
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| T |
22508271 |
cactaataataacaggcaaaaaattaacaggtatacacaaacctggaaggaaacaa |
22508326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 22508145 - 22508207
Alignment:
| Q |
13 |
atgtgagtttttactttcaaaacagcacaagctttcaggtgggtggggtgagagctatctctc |
75 |
Q |
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| T |
22508145 |
atgtgaatttttgctttccaaacaacacaaactttctggtgggtggggtgaaagctatctctc |
22508207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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