View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3248_low_32 (Length: 238)

Name: NF3248_low_32
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3248_low_32
NF3248_low_32
[»] chr5 (14 HSPs)
chr5 (121-238)||(37412501-37412618)
chr5 (1-231)||(37697612-37697842)
chr5 (1-235)||(37824716-37824950)
chr5 (1-235)||(37533921-37534155)
chr5 (1-235)||(37640693-37640927)
chr5 (1-235)||(37712445-37712679)
chr5 (2-235)||(37436528-37436761)
chr5 (1-231)||(37595149-37595379)
chr5 (1-86)||(37412419-37412504)
chr5 (1-231)||(37399917-37400147)
chr5 (1-235)||(37381440-37381674)
chr5 (1-235)||(37703489-37703723)
chr5 (77-181)||(37429616-37429720)
chr5 (1-175)||(37392066-37392237)
[»] chr4 (2 HSPs)
chr4 (1-231)||(24216845-24217075)
chr4 (3-235)||(16841983-16842215)
[»] chr3 (1 HSPs)
chr3 (1-235)||(14553859-14554093)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 37412501 - 37412618
Alignment:
121 accttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccatagg 220  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37412501 accttattgtaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccatagg 37412600  T
221 tcagttgaagtctctcaa 238  Q
    ||||||||||||||||||    
37412601 tcagttgaagtctctcaa 37412618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 37697842 - 37697612
Alignment:
1 agaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaact 100  Q
    ||||||||||||||||| |||| |||||||||||| | ||||||   |||||||||||| || |||||||| | | |||||||||||||||||||  | |    
37697842 agaatttgtcatcctctttggtttctcttagtctacgaaacactgtgttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagatt 37697743  T
101 agatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggt 200  Q
     |||||||||| |||| |  |||||| |||  ||||||||| || ||||||||||||||||||||||||||| || |||||||  |||  ||||||||||    
37697742 ggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttagacctctcttacactgctttctcaggt 37697643  T
201 gaaattccttattccataggtcagttgaagt 231  Q
    ||||||||||||||||||||||| |||||||    
37697642 gaaattccttattccataggtcaattgaagt 37697612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 37824950 - 37824716
Alignment:
1 agaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaact 100  Q
    ||||||||||||||||| |||| |||||||||||| | ||||||   |||||||||||| || |||||||| | | |||||||||||||||||||  | |    
37824950 agaatttgtcatcctctttggtttctcttagtctacgaaacactgtgttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagatt 37824851  T
101 agatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggt 200  Q
     |||||||||| |||| |  |||||| |||  ||||||||| || |||||||||||||||||||||||||||||| |||||||   ||  ||| ||||||    
37824850 ggatttgtcatttaatcataaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggacctctcttcctctgctttttcaggt 37824751  T
201 gaaattccttattccataggtcagttgaagtctct 235  Q
    ||||||||||||||||||||||| |||||||||||    
37824750 gaaattccttattccataggtcaattgaagtctct 37824716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 37534155 - 37533921
Alignment:
1 agaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaact 100  Q
    ||||||||||||||||| |||| ||||||||||||    | |||   ||||||||||||||  |||||||| | | |||||||||||||||||||  | |    
37534155 agaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagatt 37534056  T
101 agatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggt 200  Q
     |||||||||||||||||  |||||| |||  ||||||||| || |||||||||||||||||||||||||||||  ||||||||  ||  ||| ||||||    
37534055 ggatttgtcatctaatgataaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctctttctctgctttttcaggt 37533956  T
201 gaaattccttattccataggtcagttgaagtctct 235  Q
    ||||||||||||||||||||||| |||||||||||    
37533955 gaaattccttattccataggtcaattgaagtctct 37533921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 37640927 - 37640693
Alignment:
1 agaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaact 100  Q
    ||||||||||||||||| |||| |||||||||||| | || |||   ||||||||||||||  |||||||| | | |||||||||||||||||||  | |    
37640927 agaatttgtcatcctctttggtttctcttagtctacgaaaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagatt 37640828  T
101 agatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggt 200  Q
     |||||||||| |||| |  |||||| |||  ||||||||| || |||||||||||||||||||||||||||| | |||  |||| ||  ||||||||||    
37640827 ggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctgctttctcaggt 37640728  T
201 gaaattccttattccataggtcagttgaagtctct 235  Q
    ||||||||||||||||||||||| |||||||||||    
37640727 gaaattccttattccataggtcaattgaagtctct 37640693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 37712679 - 37712445
Alignment:
1 agaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaact 100  Q
    ||||||||||||||||| |||| |||||||||||| |  |||||   |||||||||||| || |||||||| | | |||||||||||||||||||  | |    
37712679 agaatttgtcatcctctttggtttctcttagtctacgagacactgtgttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagatt 37712580  T
101 agatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggt 200  Q
     |||||||||| |||| |  |||||| |||  ||||||||| || |||||||||||||||||||||||||||||  |||||||   ||  ||| ||||||    
37712579 ggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctgctttttcaggt 37712480  T
201 gaaattccttattccataggtcagttgaagtctct 235  Q
    ||||||||||||||||||||||| |||||||||||    
37712479 gaaattccttattccataggtcaattgaagtctct 37712445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 37436761 - 37436528
Alignment:
2 gaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaacta 101  Q
    |||||||||||| ||| |||| |||||||||||||    ||||   ||||||||||||||  |||||||| | | |||||||||||||||||||  | |     
37436761 gaatttgtcatcttctttggtttctcttagtctagcatccactcagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattg 37436662  T
102 gatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtg 201  Q
    |||||||||| |||| |  |||||| |||  ||||||||| || |||||||||||||||||||||||||||| | |||  |||| ||  |||||||||||    
37436661 gatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctgctttctcaggtg 37436562  T
202 aaattccttattccataggtcagttgaagtctct 235  Q
    |||||||||||||||||||||| |||||||||||    
37436561 aaattccttattccataggtcaattgaagtctct 37436528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 37595379 - 37595149
Alignment:
1 agaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaact 100  Q
    ||||||| ||||||||| |||| ||||||  |||| | |||||| | ||||||||||||||  |||||||| | | |||||||||||||||||||  | |    
37595379 agaatttttcatcctctttggtttctcttcttctacgaaacactgggttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagatt 37595280  T
101 agatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggt 200  Q
     |||||||||| ||||||  |||||| |||  ||||||||| || ||||| |||||||||||||||||||||| | |||  |||| ||  ||| ||||||    
37595279 ggatttgtcatttaatgataaccttagtggtcaacttccaaagtccaacttgagcactcctctaaggtacttgaacctccgtttatctgctttttcaggt 37595180  T
201 gaaattccttattccataggtcagttgaagt 231  Q
    ||||||||||||||||||||||| |||||||    
37595179 gaaattccttattccataggtcaattgaagt 37595149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 37412419 - 37412504
Alignment:
1 agaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacct 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
37412419 agaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacattccctctttacct 37412504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 37399917 - 37400147
Alignment:
1 agaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaact 100  Q
    ||||||||||||||||| |||| ||||||||||||    | |||   ||||||||||||||  |||||||| | | |||||||||||||||||||  | |    
37399917 agaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagatt 37400016  T
101 agatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggt 200  Q
     |||||||||| |||| |  |||||| |||  ||||||||| || |||||||||||||||||||||||||||||  |||||||   ||  ||| ||||||    
37400017 ggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctgctttttcaggt 37400116  T
201 gaaattccttattccataggtcagttgaagt 231  Q
    |||||||| ||||||||||| || |||||||    
37400117 gaaattccctattccataggccaattgaagt 37400147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 37381440 - 37381674
Alignment:
1 agaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaact 100  Q
    ||||||||||||||||| |||| |||||| |||||||  | ||| | ||||||||||||||  |||||||| | | ||||||||||||||| |||  |||    
37381440 agaatttgtcatcctctttggtttctcttggtctaggagaaactgggttgcaaggaaatttgtcaagtgacatcctctctttacctaatctccaaacact 37381539  T
101 agatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggt 200  Q
    |||||| ||||||||| |  | || |   |  ||||||| |  | |||||||||||||||| | ||||||||||| ||||||   ||   ||||||||||    
37381540 agatttatcatctaataaatatctgagcagtcaacttccgaaatccaactggagcactcctttgaggtacttggacctctctcgcacccctttctcaggt 37381639  T
201 gaaattccttattccataggtcagttgaagtctct 235  Q
    |||||||||||||||||||| ||||||||||||||    
37381640 gaaattccttattccataggccagttgaagtctct 37381674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 37703723 - 37703489
Alignment:
1 agaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaact 100  Q
    ||||||||||||||||| |||| ||||||||||||    | |||   ||||||||||||||  |||||||| | | |||||||||||||||||||  | |    
37703723 agaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagatt 37703624  T
101 agatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggt 200  Q
     ||||||||||  ||| |  |||||| |||  |||||||||  | |||||||||| |||||||||| |||||| | |||||||   ||  ||| ||||||    
37703623 ggatttgtcattcaattataaccttagtggtcaacttccaaaatccaactggagctctcctctaagatacttgaacctctcttcctctgctttttcaggt 37703524  T
201 gaaattccttattccataggtcagttgaagtctct 235  Q
    ||||||||||||||||||||||| |||||||||||    
37703523 gaaattccttattccataggtcaattgaagtctct 37703489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 37429720 - 37429616
Alignment:
77 ctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggat 176  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||||||| ||| ||||||||| ||| ||||||||||||||| ||||||||||||||     
37429720 ctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggac 37429621  T
177 ctctc 181  Q
    |||||    
37429620 ctctc 37429616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 37392066 - 37392237
Alignment:
1 agaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaact 100  Q
    ||||| ||||||||||| |||| |||||||| |||||  | | | | ||||||||||||||  |||||| | | | |||||||||||||||||||  |||    
37392066 agaatgtgtcatcctctttggtttctcttaggctaggagaaattgggttgcaaggaaatttgtcaagtgccatcctctctttacctaatcttcaaagact 37392165  T
101 agatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttgga 175  Q
    ||||||||||   ||| | || ||||  || ||||||||||  |  |||||||||||||||||||||||||||||    
37392166 agatttgtca---aataatgaacttagcggtaaacttccaaaatcaaactggagcactcctctaaggtacttgga 37392237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 24216845 - 24217075
Alignment:
1 agaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaact 100  Q
    ||||||||||||||||| |||| |||||||||||||    |||| | |||||||||||| |  |||||||| | | ||||||||| ||||||||| ||||    
24216845 agaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtgacatcctctctttaccaaatcttcaaaaact 24216944  T
101 agatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggt 200  Q
    |||||||||||| ||| | ||||||  ||| ||| |||||| || ||||||||||||||| |||||||||||||| ||||||||  ||  ||||||||||    
24216945 agatttgtcatcgaatcaagaccttcgtggtaaatttccaacgtccaactggagcactcccctaaggtacttggacctctctttctctggtttctcaggt 24217044  T
201 gaaattccttattccataggtcagttgaagt 231  Q
    |||||| | || || || |||||||||||||    
24217045 gaaatttcatactctattggtcagttgaagt 24217075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 16841983 - 16842215
Alignment:
3 aatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactag 102  Q
    ||||||||||||||| |||| ||||||  |||||  |||||| ||||||||||||||||   ||||||| | | ||||||  | |||||||||  |||||    
16841983 aatttgtcatcctctttggtttctcttcatctagcaaacactggtttgcaaggaaatttgttaagtgacatactctctttgtcaaatcttcaaagactag 16842082  T
103 atttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtga 202  Q
    ||||||||  |||| | ||||||| |||  |||||||||  | |||||||||||||||||||||||||||| | ||||||   |||  ||||||||| ||    
16842083 atttgtcacataatcaagaccttagtggtcaacttccaaaatccaactggagcactcctctaaggtacttgtacctctctcatactgctttctcaggaga 16842182  T
203 aattccttattccataggtcagttgaagtctct 235  Q
    |||  | |||||||||||||| || ||||||||    
16842183 aatctcctattccataggtcaattaaagtctct 16842215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 14554093 - 14553859
Alignment:
1 agaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaact 100  Q
    ||||||||||||||||| |||| |||||||||||||  |||||  | ||||||||||||||  |||||||| | | |||||| || ||||||||| ||||    
14554093 agaatttgtcatcctctttggtttctcttagtctagcaaacaccgggttgcaaggaaatttgtcaagtgacatactctctttgccaaatcttcaaaaact 14553994  T
101 agatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggt 200  Q
    |||||||  |  |||||| |  |||| |||  |||||||||  | ||||||||| |||||||||||||||||| | |||  ||   ||  ||||||||||    
14553993 agatttggtaggtaatgatggtcttagtggtcaacttccaaaatccaactggagtactcctctaaggtacttgtacctccattactctgctttctcaggt 14553894  T
201 gaaattccttattccataggtcagttgaagtctct 235  Q
    ||||||||||||||||||||||| |||||||||||    
14553893 gaaattccttattccataggtcaattgaagtctct 14553859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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