View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3248_low_33 (Length: 238)

Name: NF3248_low_33
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3248_low_33
NF3248_low_33
[»] scaffold0528 (2 HSPs)
scaffold0528 (98-238)||(244-383)
scaffold0528 (18-97)||(414-493)
[»] chr5 (9 HSPs)
chr5 (98-238)||(31038953-31039092)
chr5 (98-238)||(31048176-31048315)
chr5 (18-97)||(31038843-31038922)
chr5 (18-97)||(31048066-31048145)
chr5 (18-100)||(31052178-31052259)
chr5 (97-169)||(31033895-31033966)
chr5 (98-163)||(31052287-31052352)
chr5 (18-86)||(31033452-31033521)
chr5 (179-238)||(31052597-31052656)


Alignment Details
Target: scaffold0528 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 383 - 244
Alignment:
Q  98 tttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaactatagcgaagagtcaatacagaaagatgatttt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  383 tttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaactatag-gaagagtctatacagaaagatgatttt 285  T
Q  198 tatttctatgaacatataatacaaggatagagtcttttatt 238  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  284 tatttctatgaacatataatacaaggatagagtcttttatt 244  T

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Target: scaffold0528; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 493 - 414
Alignment:
Q  18 taaagagcaacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttcattatgtgaata 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  493 taaagagcaacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttcattatgtgaata 414  T

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Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 31038953 - 31039092
Alignment:
Q  98 tttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaactatagcgaagagtcaatacagaaagatgatttt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  31038953 tttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaactatag-gaagagtctatacagaaagatgatttt 31039051  T
Q  198 tatttctatgaacatataatacaaggatagagtcttttatt 238  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31039052 tatttctatgaacatataatacaaggatagagtcttttatt 31039092  T

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Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 31048176 - 31048315
Alignment:
Q  98 tttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaactatagcgaagagtcaatacagaaagatgatttt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  31048176 tttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaactatag-gaagagtctatacagaaagatgatttt 31048274  T
Q  198 tatttctatgaacatataatacaaggatagagtcttttatt 238  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31048275 tatttctatgaacatataatacaaggatagagtcttttatt 31048315  T

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Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 31038843 - 31038922
Alignment:
Q  18 taaagagcaacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttcattatgtgaata 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31038843 taaagagcaacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttcattatgtgaata 31038922  T

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Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 31048066 - 31048145
Alignment:
Q  18 taaagagcaacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttcattatgtgaata 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31048066 taaagagcaacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttcattatgtgaata 31048145  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 31052178 - 31052259
Alignment:
Q  18 taaagagcaacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttcattatgtgaatattt 100  Q
    |||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  31052178 taaagaacaacatcggcgaatt-attggatagccgtcgacttattctagtcacttagttgtttgcttcataatgtgaatattt 31052259  T

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Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 31033895 - 31033966
Alignment:
Q  97 atttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaactatag 169  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31033895 atttacagtttctctt-caaatcatcaaatactgagaggctgatttaatacaactttattgaaagaactatag 31033966  T

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Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 31052287 - 31052352
Alignment:
Q  98 tttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaa 163  Q
    |||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  31052287 tttacagtttctctttcaaatcatcaaatactgagaagctgatttaatacaactttattgaaagaa 31052352  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 31033452 - 31033521
Alignment:
Q  18 taaagagcaacatcggcaaatttattggatagccgtcaacttattcta--gtcacttagttgtttgcttca 86  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||||||||||||||||    
T  31033452 taaagagcaacatcggcaaatt-attggatagccgtcgacttattctatggtcacttagttgtttgcttca 31033521  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 31052597 - 31052656
Alignment:
Q  179 aatacagaaagatgatttttatttctatgaacatataatacaaggatagagtcttttatt 238  Q
    ||||||| ||||||| |||||||||| |||||||||||||| |   ||||||||||||||    
T  31052597 aatacagcaagatgaattttatttctttgaacatataataccacattagagtcttttatt 31052656  T

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