View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3248_low_34 (Length: 237)
Name: NF3248_low_34
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 46092990 - 46092840
Alignment:
| Q |
18 |
tatatggcccaactgtctgaattttgtttatactaattatatgctcctttcattgattcgtaaccagaacaagctacgcaacctcacataatcagttaat |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46092990 |
tatatggcccaagtgtctgaattttgtttatactaattatatgctcctttcattgattcgtaaccagaacaagctacgcaacctcacataatcag-taat |
46092892 |
T |
|
| Q |
118 |
taacactatatacaaactctattcattgattcaaggaaatggtgataatgga |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
46092891 |
taacactatatacaaactctattcattgattgaaggaaattgtgataatgga |
46092840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 46092825 - 46092771
Alignment:
| Q |
187 |
gtgcgcaattattta----caaactctttgacattgtttagtgttagaaaattcc |
237 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46092825 |
gtgcgcaattatttaattacaaactctttgacattgtttagtgttagaaaattcc |
46092771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University