View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3248_low_35 (Length: 236)
Name: NF3248_low_35
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4424861 - 4425086
Alignment:
| Q |
1 |
cttgatgaattgggcacacatatcactttcaattaaaattggaatcccctgtcccctacaaatctacgtataatcaaaccaataattcaggatccatgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4424861 |
cttgatgaattgggcacacatatcactttcaattaaaattggaatcccctgtcccctacaaatctacgtataatcaaaccaataattcaggatccatgca |
4424960 |
T |
|
| Q |
101 |
ataaaaacaaaaatgatttaaatcaggttgagaatgtgtaaaaaggatactggtagctgtcgtgc---nnnnnnnnccttcataagatcgacatgagttt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4424961 |
ataaaaacaaaaatgatttaaatcaggttgagaatgtgtaaaaaggatactggtagctgtcgtgctttttttttttccttcataagatcgacatgagttt |
4425060 |
T |
|
| Q |
198 |
ccccacaagtgaacctgtttttaatg |
223 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4425061 |
ccccacaagtgaacctgtttttaatg |
4425086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University