View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_low_39 (Length: 227)
Name: NF3248_low_39
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 13911729 - 13911920
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcgaatggtaaatttccaaagaagtgattcctctgtaagcttaaaacttgcaactcttttaatttgcttcc |
117 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13911729 |
agagttgaatgttttgtagatggcagagttcgaatggtaaatttccaaagaagtgattcctctgtaagcttaaaacttgcaactcttttaattcccttcc |
13911828 |
T |
|
| Q |
118 |
aatccaataagggatgagtccatctaatctattttctctcaaatctagcattatcaactttgtgcagttcattaaggagaaagggatctccc |
209 |
Q |
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||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13911829 |
aatccaataagggataagcccatctaatctattttctttcaaatctagcattatcaactttgtgcagttcattaaggagaaagggatctccc |
13911920 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 13473156 - 13472970
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcgaatggtaaatttccaaagaagtgattcctctgtaagcttaaaacttgcaactcttttaatttgcttcc |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||||| |||||| |
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| T |
13473156 |
agagttgaatgttttgtagataacaaagttcgaatggtaaacttccaaagaagtgattcctttgtaagcttaaaacttggagctcttttaattcgcttcc |
13473057 |
T |
|
| Q |
118 |
aatccaataagggatgagtccatctaatctattttctctcaaatctagcattatcaactttgtgcagttcattaaggagaaagggat |
204 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||| |
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| T |
13473056 |
aatccaataagggatgagtccctttaatctattttctctcaaatctagcattactaactttgtacagttcattaaggagacagggat |
13472970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 13893163 - 13892973
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcgaatggtaaatttccaaagaagtgattcctctgtaagcttaaaacttgcaactcttttaatttgcttcc |
117 |
Q |
| |
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|||| |||||||||||||||| ||||||| |||||||||| |||||||||||||||| || | ||||||||||||||||| |||||||||||||||||| |
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| T |
13893163 |
agagctgaatgttttgtagataacaaagtttgaatggtaaacttccaaagaagtgattactttttaagcttaaaacttgcagctcttttaatttgcttcc |
13893064 |
T |
|
| Q |
118 |
aatccaataagggatgagtccatctaatctattttctctcaaatctagcattatcaactttgtgcagttcattaaggagaaagggatctcc |
208 |
Q |
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|||||||||||||| | |||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
13893063 |
aatccaataagggacgggtccttctaatctattttctctcaaatcaagcattactaactttctgcagttcattaaggagaaagggatctcc |
13892973 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 14025189 - 14025378
Alignment:
| Q |
20 |
agttgaatgttttgtagatggcaaagttcgaatggtaaatttccaaagaagtgattcctctgtaagcttaaaacttgcaactcttttaatttgcttccaa |
119 |
Q |
| |
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|||||||| |||||||||||||| ||||| ||||||||| ||||| |||| ||||| || ||||||||||||||||||||||||||||||| ||||||| |
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| T |
14025189 |
agttgaatcttttgtagatggcagagttccaatggtaaacttccatagaattgatttctttgtaagcttaaaacttgcaactcttttaattcacttccaa |
14025288 |
T |
|
| Q |
120 |
tccaataagggatgagtccatctaatctattttctctcaaatctagcattatcaactttgtgcagttcattaaggagaaagggatctccc |
209 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14025289 |
tccaataagggatgtgtccttctaatctattgtctctcaaatcaagcattactaactttgtgcagttcattaaggagaaagggatctccc |
14025378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 13875459 - 13875273
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcgaatggtaaatttccaaagaagtgattcctctgtaagcttaaaacttgcaactcttttaatttgcttcc |
117 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
13875459 |
agagttggatgttttgtaggtagcaaagttcgagggggaaacttccaaagaagtgattcctttgtaagcttaaaacttgcaactcttttaattcacttcc |
13875360 |
T |
|
| Q |
118 |
aatccaataagggatgagtccatctaatctattttctctcaaatctagcattatcaactttgtgcagttcattaaggagaaagggat |
204 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
13875359 |
aatccaataagggatcagtccttctaatccattttctctcaaatccagcattactaactttgtgcagttcattaaggagaaagggat |
13875273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 14084573 - 14084763
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcgaatggtaaatttccaaagaagtgattcctctgtaagcttaaaacttgcaactcttttaatttgcttcc |
117 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| |||||||||||| |||| |||||| |
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| T |
14084573 |
agagttgaattctttgaagaaagcaaagttcgaatgggaaacttccaaagaagtgattcctttgtaagcttaaaaattgcaactctttcaattcgcttcc |
14084672 |
T |
|
| Q |
118 |
aatccaataagggatgagtccatctaatctattttctctcaaatctagcattatcaactttgtgcagttcattaaggagaaagggatctcc |
208 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14084673 |
aatccaataagggacaagttcttctaatctattttctctaaaatcaagcattactaactttgtgcagttcattaaggagaaagggatctcc |
14084763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 14110382 - 14110572
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcgaatggtaaatttccaaagaagtgattcctctgtaagcttaaaacttgcaactcttttaatttgcttcc |
117 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||||||| |||||||||| |||||||| |||||||||||| ||||| ||||||||||||||||| |
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| T |
14110382 |
agagttgaatattttgtaaatggcaaagttcaaatggtaaacttccaaagaaatgattccttcgtaagcttaaaatttgcagatcttttaatttgcttcc |
14110481 |
T |
|
| Q |
118 |
aatccaataagggatgagtccatctaatctattttctctcaaatctagcattatcaactttgtgcagttcattaaggagaaagggatctcc |
208 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||| | ||||| || | |||||||||||||||||||||||||||||| |
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|
| T |
14110482 |
aatccagtaagggatgagtccatttaatctattttctctcaaatcaaacattaccatatcagtgcagttcattaaggagaaagggatctcc |
14110572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 13932258 - 13932445
Alignment:
| Q |
22 |
ttgaatgttttgtagatggcaaagttcgaatggtaaatttccaaagaagtgattcctctgtaagcttaaaacttgcaactcttttaatttgcttccaatc |
121 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||||||| |||||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||| |
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| T |
13932258 |
ttgaatgaattgtagatggcagagttccaatggtaaacttccaaagaagtaattcccttttaagcttaaaacttgcaactcttttaattcgcttccaatc |
13932357 |
T |
|
| Q |
122 |
caataagggatgagtccatctaatctattttctctcaaatctagcattatcaactttgtgcagttcattaaggagaaagggatctccc |
209 |
Q |
| |
|
|||||||||||| |||| ||||||||||| ||||||| || ||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
13932358 |
caataagggatgtgtccttctaatctattgtctctcatgtcaagcattactaactgtgtgcagttcattaaggagaaagggatctccc |
13932445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 14015056 - 14015247
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcgaatggtaaatttccaaagaagtgattcctctgtaagcttaaaacttgcaactcttttaatttgcttcc |
117 |
Q |
| |
|
|||||| ||||||||||| || |||| ||| ||||||||| |||||||||||| |||| | ||||| ||||||||||||||| |||||||| |||| |
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|
| T |
14015056 |
agagtttaatgttttgtatataacaaatttcaaatggtaaacttccaaagaagttattcttttgtaaacttaaaacttgcaaccgttttaattcaattcc |
14015155 |
T |
|
| Q |
118 |
aatccaataagggatgagtccatctaatctattttctctcaaatctagcattatcaactttgtgcagttcattaaggagaaagggatctccc |
209 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
14015156 |
aatccaataagggatgagtccttgtaatctattttctcttaaatcaagcattactaactttgtgcagttcattaaggagaaagggatctccc |
14015247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 13862989 - 13862801
Alignment:
| Q |
18 |
agagttgaatgttttgtagatggcaaagttcgaatggtaaatttccaaagaagtgattcctctgtaagcttaaaacttgcaactcttttaatttgcttcc |
117 |
Q |
| |
|
|||||||||| ||| | |||| ||||||||| | ||||||| |||| ||||| |||||||| |||||||||||||| |||| ||||||||| | |||||| |
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|
| T |
13862989 |
agagttgaatatttcgaagatagcaaagttctactggtaaacttccgaagaaatgattcctatgtaagcttaaaacctgcagctcttttaactcgcttcc |
13862890 |
T |
|
| Q |
118 |
aatccaataagggatgagtccatctaatctattttctctcaaatctagcattatcaactttgtgcagttcattaaggagaaagggatct |
206 |
Q |
| |
|
||||||||||||||||| ||| |||| ||| || ||||||| ||| ||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
13862889 |
aatccaataagggatgactccttctagtctgttgtctctcatatcaagcattactaactttgtgcagttcattaaggaggaagggatct |
13862801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 80 - 209
Target Start/End: Original strand, 14047318 - 14047447
Alignment:
| Q |
80 |
tgtaagcttaaaacttgcaactcttttaatttgcttccaatccaataagggatgagtccatctaatctattttctctcaaatctagcattatcaactttg |
179 |
Q |
| |
|
||||||||||||| ||| | |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
14047318 |
tgtaagcttaaaatttgtagatcttttaattcacttccaatccaataagggatgagtccttctaatctattttctctcaaatccagcattaccaactttg |
14047417 |
T |
|
| Q |
180 |
tgcagttcattaaggagaaagggatctccc |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
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|
| T |
14047418 |
tgcagttcattaaggaggaagggatctccc |
14047447 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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