View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_low_42 (Length: 216)
Name: NF3248_low_42
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 30574288 - 30574467
Alignment:
| Q |
18 |
agatcagtgaatcaaagtggctgtaggctgtagcagactgtcgttggaaatagaaaagcagcagacttgtaatatggtcttttgctttaaaatatagcag |
117 |
Q |
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| T |
30574288 |
agatcagtgaatcaaagtggctgtaggctgtagcagactgtccttggaaatagaaaagcagcagacttgtaatatggttttttgctttaaaatatagcag |
30574387 |
T |
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| Q |
118 |
cagacattgacagatttttctataaggaacatcttgatgcatgtgaaactttagcataataacttatgcaaatgttatgg |
197 |
Q |
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| T |
30574388 |
cagacattgacagatttttctataaggaacatcttgatgcatgtgaaactttagcataataacttatgcaaatgttatgg |
30574467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 30570457 - 30570566
Alignment:
| Q |
91 |
atggtcttttgctttaaaatatagcagcagacattgacagatttttctataaggaacatcttgatgcatgtgaaactttagcataataacttatgcaaat |
190 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
30570457 |
atggtcttttgctttaaaatgtagcagcagacattgacagatttttctacaaggaacatc-tgatgcatgtgaaactttagcataataactgatgcaaat |
30570555 |
T |
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| Q |
191 |
gttatggttgt |
201 |
Q |
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| T |
30570556 |
gttatggttgt |
30570566 |
T |
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