View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_low_5 (Length: 483)
Name: NF3248_low_5
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 16 - 459
Target Start/End: Complemental strand, 43021431 - 43020987
Alignment:
| Q |
16 |
atccaagttaaagtgtaatcaattaatgaaattaaacaaatgaaatccagagtggggtctgtaaaatagaagcagacacacaaagttggggcccttgtgg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43021431 |
atccaagttaaagtgtaatcaattaatgaaattaaacaaatgaaatgcagagtggggtctgaaaaatagaagcagacacacaaagttggggcccttgtgg |
43021332 |
T |
|
| Q |
116 |
aagaatctaaaaaaggtggataggagccaaattatgtttatatgttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaa |
215 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021331 |
aagaatctaaaaaaggtggataggagccatattatgtttatatgttatattcgtttctgcactactaccattcctcctgcgacttctttatgggaccaaa |
43021232 |
T |
|
| Q |
216 |
tctctggcataccaagaagccatataaaactgctagtaaaaatgctatctctggctatatatgcccccttcaaaagtatccaaaatcttccataaaagta |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021231 |
tctctggcataccaagaagccatataaaactgctagtaaaaatgctatctctggccatatatgcccccttcaaaagtatccaaaatcttccataaaagta |
43021132 |
T |
|
| Q |
316 |
taataactgaatatcaccttttttaggcctt-gtttaaattttgaatacagtgtgaaaaggtatattttcaatttcaaattaaaccaatcatgtaatccg |
414 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021131 |
taataactgaatatcaccttttttaggccttagtttaaattttgaatacagtgttaaaaggtatattttcaatttcaaattaaaccaatcatgtaatccg |
43021032 |
T |
|
| Q |
415 |
atcctattgctgtttattttaattaattattacatcaattcttaa |
459 |
Q |
| |
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| T |
43021031 |
atcctattgctgtttattttaattaattattacatcaattcttaa |
43020987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 159 - 299
Target Start/End: Original strand, 13675644 - 13675784
Alignment:
| Q |
159 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
258 |
Q |
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|||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | |||||||||||||||| |||||||||| |||||| | |||| |
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| T |
13675644 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaattttctggcataccaagaaaccatataaaaatgctagcacaaat |
13675743 |
T |
|
| Q |
259 |
gctatctctggctatatatgcccccttcaaaagtatccaaa |
299 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
13675744 |
gctatctctatctatatatgcccccttcaaaagtatccaaa |
13675784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 159 - 299
Target Start/End: Complemental strand, 19965075 - 19964935
Alignment:
| Q |
159 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
258 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| | | ||| |||||||||| |||||||||| |||||| | |||| |
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| T |
19965075 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttttgggataccaagaaaccatataaaaatgctagcacaaat |
19964976 |
T |
|
| Q |
259 |
gctatctctggctatatatgcccccttcaaaagtatccaaa |
299 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
19964975 |
gctatctctatctatatatgcccccttcaaaagtatccaaa |
19964935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 50805826 - 50805724
Alignment:
| Q |
159 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
258 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| | ||| |||||||||||| |||||||||| |||||| | |||| |
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| T |
50805826 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttctagcataccaagaaaccatataaaaatgctagcacaaat |
50805727 |
T |
|
| Q |
259 |
gct |
261 |
Q |
| |
|
||| |
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|
| T |
50805726 |
gct |
50805724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 261
Target Start/End: Original strand, 50870051 - 50870153
Alignment:
| Q |
159 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
258 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | | | | |||||||||| |||||||||| |||||| | |||| |
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| T |
50870051 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaatttttttgtataccaagaaaccatataaaaatgctagcacaaat |
50870150 |
T |
|
| Q |
259 |
gct |
261 |
Q |
| |
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||| |
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| T |
50870151 |
gct |
50870153 |
T |
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