View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3248_low_6 (Length: 450)

Name: NF3248_low_6
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3248_low_6
NF3248_low_6
[»] chr5 (1 HSPs)
chr5 (18-440)||(11173832-11174244)
[»] chr8 (3 HSPs)
chr8 (344-415)||(30221417-30221488)
chr8 (341-436)||(19005929-19006024)
chr8 (366-436)||(18968434-18968504)
[»] chr6 (2 HSPs)
chr6 (131-206)||(6213790-6213865)
chr6 (137-165)||(10214960-10214988)
[»] chr2 (1 HSPs)
chr2 (241-285)||(5453671-5453715)
[»] chr1 (1 HSPs)
chr1 (180-264)||(43328449-43328533)
[»] chr7 (1 HSPs)
chr7 (137-168)||(4628293-4628324)
[»] chr3 (2 HSPs)
chr3 (133-168)||(10794610-10794645)
chr3 (137-169)||(36348619-36348651)


Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 11173832 - 11174244
Alignment:
Q  18 aaaattctcaccccaccagactctagcttgccacttatcaaagatttctcgacttcacatttaaatattaagcaataagtattgttacaactaaattatg 117  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11173832 aaaattctcaccccaccatactctagcttgccacttatcaaagatttcgcgacttcacatttaaatgttaagcaataagtattgttacaactaaattatg 11173931  T
Q  118 agacgtaaactaaacctacgtagcaccgacacttcaaattgaagacgtgtttggtatctgataccaatacgacactgacacatatggttacattcagtta 217  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||    
T  11173932 agacgtaaactaaacctacgtagcactgacacttcaaattgaagacgtgtttggtatctgataccaatacgacactgacacatat----------agtta 11174021  T
Q  218 catctatttatcaaatcattacgagtgtcaacgtgtcagtgttgtgttcggtgtttgtgtatgtgtcaatatattaaatagaactaaacaagtaaaaata 317  Q
    || | |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11174022 cagcaatttatcaaatcattacgagtgtcaacgtgtcagtgttgtgtccagtgtttgtgtatgtgtcaatatattaaatagaactaaacaagtaaaaata 11174121  T
Q  318 atcaaagcttgtaatagtttttaaacatacttgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccggct 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11174122 atcaaagcttgtaatagtttttaaacatacttgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccggct 11174221  T
Q  418 ccacctcagccacccactctctg 440  Q
    |||||||||||||||||||||||    
T  11174222 ccacctcagccacccactctctg 11174244  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 344 - 415
Target Start/End: Complemental strand, 30221488 - 30221417
Alignment:
Q  344 atacttgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccgg 415  Q
    |||| |||||||||||| |||||||||||||||||||| ||||||||||| |||||||| || ||| |||||    
T  30221488 atacctgaagcgaattctcttgagatcatttccaccattaggaagagacacaaaggtaatatgaacccccgg 30221417  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 436
Target Start/End: Complemental strand, 19006024 - 19005929
Alignment:
Q  341 aacatacttgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccggctccacctcagccacccactc 436  Q
    ||||||||||||| ||||||   | |||||||||||||||  | ||||| ||| |||| |||||||| | || ||||||||||  |||||||||||    
T  19006024 aacatacttgaagtgaattcttcttagatcatttccaccaataagaagatacacaaagataacatcagcccctggctccacctatgccacccactc 19005929  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 436
Target Start/End: Complemental strand, 18968504 - 18968434
Alignment:
Q  366 agatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccggctccacctcagccacccactc 436  Q
    |||||||||||||||| ||||||||| | |||| |||||||||| ||  |||||||||  |||| ||||||    
T  18968504 agatcatttccaccattaggaagagagacaaagataacatcaacccctcgctccacctgcgccaaccactc 18968434  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 6213790 - 6213865
Alignment:
Q  131 acctacgtagcaccgacacttcaaattgaagacgtgtttggtatctgataccaatacgacactgacacatatggtt 206  Q
    ||||| ||||| ||||||||||| ||||||| | |||||| | ||||| ||||| |||||||||||||||||||||    
T  6213790 acctatgtagctccgacacttcacattgaaggcttgtttgttgtctgacaccaacacgacactgacacatatggtt 6213865  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 10214988 - 10214960
Alignment:
Q  137 gtagcaccgacacttcaaattgaagacgt 165  Q
    |||||||||||||||||||||||||||||    
T  10214988 gtagcaccgacacttcaaattgaagacgt 10214960  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 5453715 - 5453671
Alignment:
Q  241 agtgtcaacgtgtcagtgttgtgttcggtgtttgtgtatgtgtca 285  Q
    |||||| |||||| ||||||||||| |||||||||||||||||||    
T  5453715 agtgtctacgtgttagtgttgtgtttggtgtttgtgtatgtgtca 5453671  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 43328533 - 43328449
Alignment:
Q  180 accaatacgacactgacacatatggttacattcagttacatctatttatcaaatcattacgagtgtcaacgtgtcagtgttgtgt 264  Q
    ||||| |||||| |||||||| |||||||||| | |||  ||  ||| |||||| ||||  ||||||||||||||||||||||||    
T  43328533 accaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgtcaacgtgtcagtgttgtgt 43328449  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 4628293 - 4628324
Alignment:
Q  137 gtagcaccgacacttcaaattgaagacgtgtt 168  Q
    ||||||||||||||||||||||||||||||||    
T  4628293 gtagcaccgacacttcaaattgaagacgtgtt 4628324  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 10794645 - 10794610
Alignment:
Q  133 ctacgtagcaccgacacttcaaattgaagacgtgtt 168  Q
    ||||||||||||||||||||| ||||||||||||||    
T  10794645 ctacgtagcaccgacacttcatattgaagacgtgtt 10794610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 36348619 - 36348651
Alignment:
Q  137 gtagcaccgacacttcaaattgaagacgtgttt 169  Q
    ||||||||||||||||||||||||| |||||||    
T  36348619 gtagcaccgacacttcaaattgaagtcgtgttt 36348651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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