View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_low_7 (Length: 448)
Name: NF3248_low_7
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 784046 - 783611
Alignment:
| Q |
1 |
ttggtaccattttacatgattagtacatactaatcaaatattaccaaagctgtttatgccaattggttgcatgtgtttatcagttcagcctcattccaaa |
100 |
Q |
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| T |
784046 |
ttggtaccattttacatgattagtacatactaatcaaatattaccaaagctgtttatgccaattggttgcatgtgtttatcagttcagcctcattccaaa |
783947 |
T |
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| Q |
101 |
caaatttaacaagtgatcaataacatcaaatgcataaaaaattgaaacttggcatgaagaagcatatatctatacaagaaaaaccaatttaaaaagacat |
200 |
Q |
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| T |
783946 |
caaatttaacaagtgatcaataacatcaaatgcataaaaaattgaaacttggcatgaagaagcatatatctatacaagaaaaaccaattt--aaagacat |
783849 |
T |
|
| Q |
201 |
ttcttgacaaattttaatatctgtaatagtattctaagtgattagttaccaagatttgatcataaagtaacctcaaaaagaacatactcctaatattgag |
300 |
Q |
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| T |
783848 |
ttcttggcaaattttaatatctgtaatagtattctaagtgattagttaccaagatttgatcataaagtaacctcaaaaagaacatactcctaatattgag |
783749 |
T |
|
| Q |
301 |
atccaacccctcacccaac---nnnnnnnnnnnnnncttgatggatgagttggttattttatttctgaagtatttacttttccnnnnnnnnnnnnnnnnn |
397 |
Q |
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| T |
783748 |
atccaacccctcacccaacaaaaaaagaaaaaaaaacttgatggatgagttggttattttatttctgaagtatttacttttccctctctctatctctctc |
783649 |
T |
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| Q |
398 |
ntttcctcattcttttgaaagagttaactatgcttcct |
435 |
Q |
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| T |
783648 |
ttttcctcattcttttgaaagagttaactatgcttcct |
783611 |
T |
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