View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_low_8 (Length: 438)
Name: NF3248_low_8
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 6 - 398
Target Start/End: Complemental strand, 44659236 - 44658842
Alignment:
| Q |
6 |
gtgagatgaaccgaccatgatccttcgnnnnnnntgaaccgaccaagatcgttcgcatttattaaaaaatggttggtaatttaaactttttcagcacaag |
105 |
Q |
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| T |
44659236 |
gtgatatgaaccgaccatgatccttcgaaaaaaatgaaccgaccaagatcgttcgcatttattaaaaaatggttggtaatttaaactttttcagcacaag |
44659137 |
T |
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| Q |
106 |
tacccttgtctctgatcaacgacgtgtaattcatcggaaaagcacgtttatcttttcttgtatacagtctgttgattctcgatcgaccaaaagaattcca |
205 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44659136 |
tacccttgtctctgatcgacgacgtgtaattcatcggaaaagcacgtttatcttttcttgtatacagtctgttgattctcgatcgaccaaaagaattcca |
44659037 |
T |
|
| Q |
206 |
agcacaagaataggagagctggaaagaggcgttaggacggtgatgacagtcatcataaatatactataaagcttcatcatttgtctaaaaaatgtgtact |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44659036 |
agcacaagaataggagagctggaaagaggcgttaggacggtgatgacagtcatcataaatatactataaagcttcatcatttgtctaaaaaatgtgtact |
44658937 |
T |
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| Q |
306 |
--tttccctttgataagttgtccaaaactttaatgacgaatatggttgtgaaatcaaacaatnnnnnnncaccattaaatgtttcgtaagtcata |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
44658936 |
gatttccctttgataagttgtccaaaactttaatgacgaatatggttgtgaaatcgaacaataaaaaaacaccattaaatgtttcataagtcata |
44658842 |
T |
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