View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3248_low_9 (Length: 409)
Name: NF3248_low_9
Description: NF3248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3248_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 44828402 - 44828804
Alignment:
| Q |
1 |
ctttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctgcatattttgattgagaacatttgtccatgacataaaattag |
100 |
Q |
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| T |
44828402 |
ctttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctgcatattttgattgagaacatttgtccatgacataaaattag |
44828501 |
T |
|
| Q |
101 |
ctgctcgtacgcaattaatacaacacatatcacaaagaaacttatatttgtaatacatattagaattaacaatcatcaaagctatattaatcttgtaaat |
200 |
Q |
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| T |
44828502 |
ctgctcatacgtaattaatacaacacatatcacaaagaaacttatttttgtaatacatattagaattaacaatcatcaaagctatattaatcttgtaaat |
44828601 |
T |
|
| Q |
201 |
tactctacgttacctgaatttctgaactggtacctccgatgacatccttaacaatactcaacacttcctcagttaaaccatgttcatcaaataccgtcct |
300 |
Q |
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| T |
44828602 |
tactctacattacctgaatttctgaactggtacctccgatgacatccttaacaatactcaacacttcctcagttaaaccatgttcatcaaataccgtcct |
44828701 |
T |
|
| Q |
301 |
aatatattaaatagtcacaagataatatgtttagttaaggagaaacttaaattattttaatgaagtagataaaatgatgcacaataagtagaattttctt |
400 |
Q |
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| T |
44828702 |
aatatattaaatagtcacaagataatatgtttagttaaggagaaacttaaattattttaatgaagtagataaaatgatgcacaataagtagaattttttt |
44828801 |
T |
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| Q |
401 |
gga |
403 |
Q |
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| T |
44828802 |
gga |
44828804 |
T |
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Back To:
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 8370704 - 8370763
Alignment:
| Q |
24 |
ttggtccttttccttgatatttttatatcgctcctgcatattttgattgagaacatttgt |
83 |
Q |
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| T |
8370704 |
ttggtccttttccttgatattttgataatgctcctgcatattttgattgaaaatatttgt |
8370763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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