View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3249_high_10 (Length: 420)
Name: NF3249_high_10
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 405
Target Start/End: Complemental strand, 4861481 - 4861088
Alignment:
| Q |
12 |
agagatgggtagaggaaacacaacaaaagatatagacaaaactttcatattagtgttaaaagtattggtatatcaattgagtaagagtcccacgttagaa |
111 |
Q |
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| T |
4861481 |
agagatgggtagaggaaacacaacaaaagatatagacaaaactttcatattagtgttaaaagtatttgtatatcaattgagtaagagtctcacgttagaa |
4861382 |
T |
|
| Q |
112 |
gnnnnnnntgattgttaaacacattatatgtgaaatgagttataagtataatgtctacaggttttggattaaaatatgtcgtccaactcatttatatgat |
211 |
Q |
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| T |
4861381 |
gaaaaaaatgattgttaaacacattatatgtgaaatgacttataagtataatgtctaaaggctttggattaaaatatgtcgtccaactcacttatatgat |
4861282 |
T |
|
| Q |
212 |
tgtttaaaatttgatatgatgattcttcggatccctcataaacaaaccgtgatattaaagtcgatggttgaaccaactcattgtatctaaagtcttttag |
311 |
Q |
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| T |
4861281 |
tgtttaaaatctgatatgatgattcttcggatccctcatgaacaaactgtgatattaaagttgatggttgaaccagttcattgtatctaaagtcttttag |
4861182 |
T |
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| Q |
312 |
acaaggaggttcaggcagtgtgtcttgaagattgccactaatgatagtgcaagtagaaatagatgaaaatgtttcgtttgacacgggtgaactt |
405 |
Q |
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| T |
4861181 |
acaaggatgttcaggcagtgtgtcttgaagattgccactaatgatggtgcaagtagaaatagatgaaaaagtttcgtttgacgcgggtgaactt |
4861088 |
T |
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