View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3249_high_15 (Length: 311)
Name: NF3249_high_15
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 44823050 - 44823111
Alignment:
| Q |
133 |
tctttcgttcccaagaaaggaaaaacaagtgttgtcatgttcgttggtttacaaggtttgtt |
194 |
Q |
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| T |
44823050 |
tcttttgttcccaaaagagaaaaaacaagtgttgttatgtttgttggtttacaaggtttgtt |
44823111 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 2205262 - 2205214
Alignment:
| Q |
141 |
tcccaagaaaggaaaaacaagtgttgtcatgttcgttggtttacaaggt |
189 |
Q |
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|||||| ||||||||| | |||||||||||||||||||||||||||||| |
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| T |
2205262 |
tcccaaaaaaggaaaagctagtgttgtcatgttcgttggtttacaaggt |
2205214 |
T |
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