View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3249_high_18 (Length: 268)
Name: NF3249_high_18
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 37233419 - 37233660
Alignment:
| Q |
12 |
atgaatctattgatgagtacaagagccttgtagctttggtaattgatagttaatatcccaccannnnnnnatcctacattgataaccttatttata--gt |
109 |
Q |
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| T |
37233419 |
atgaatctactgatgagtacaagagccttgtagctttggtaattgatagttaatatcccaccatttttt-atcctacattgataaccttatttatatagt |
37233517 |
T |
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| Q |
110 |
tatacataaccaatgagtccctaaatatatgtttatattttatgtgtgnnnnnnncttaaaaactgttatgtatggcagtttgatgaagttatggatcaa |
209 |
Q |
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| T |
37233518 |
tatacataaccattgagtacctaaatatatgttcatatataatgcgtgtttttt-cttaaaaactgttacgtatggcagtttgatgaagttatggatcaa |
37233616 |
T |
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| Q |
210 |
acgggagatcctatagaaggtctaagaaagctggtggatccaag |
253 |
Q |
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| T |
37233617 |
aagggagatcctatagaaggtctaagaaagctggtggatccaag |
37233660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 37224272 - 37224348
Alignment:
| Q |
177 |
tatgtatggcagtttgatgaagttatggatcaaacgggagatcctatagaaggtctaagaaagctggtggatccaag |
253 |
Q |
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| T |
37224272 |
tatgtatggcagtttgatgaagttatggatcaaacgggagatcctatagaaggtctaagaaagctggtggatccaag |
37224348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 37218409 - 37218471
Alignment:
| Q |
12 |
atgaatctattgatgagtacaagagccttgtagctttggtaattgatagttaatatcccacca |
74 |
Q |
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| T |
37218409 |
atgaatctattgatgagtacaagagccttgtagctttggtaattgattgttaatctcccacca |
37218471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 37224125 - 37224187
Alignment:
| Q |
12 |
atgaatctattgatgagtacaagagccttgtagctttggtaattgatagttaatatcccacca |
74 |
Q |
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| T |
37224125 |
atgaatctattgatgagtacaagagccttgtagctttggtaattgattgttaatctcccacca |
37224187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 37218556 - 37218632
Alignment:
| Q |
177 |
tatgtatggcagtttgatgaagttatggatcaaacgggagatcctatagaaggtctaagaaagctggtggatccaag |
253 |
Q |
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| T |
37218556 |
tatgtatgacagtttgatgaagttatgaatcaaacgggagattgtatagacgatctaagaaagctggtggatccaag |
37218632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 37384704 - 37384638
Alignment:
| Q |
187 |
agtttgatgaagttatggatcaaacgggagatcctatagaaggtctaagaaagctggtggatccaag |
253 |
Q |
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| T |
37384704 |
agtttgatgaagttattgatcaaaagggagatcctattgaaggtctaagaaatctggtggatccaag |
37384638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 37384812 - 37384769
Alignment:
| Q |
12 |
atgaatctattgatgagtacaagagccttgtagctttggtaatt |
55 |
Q |
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| T |
37384812 |
atgaatctattgatgaatacaagagccttgtagctttggtaatt |
37384769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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