View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3249_high_22 (Length: 235)
Name: NF3249_high_22
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 15375409 - 15375588
Alignment:
| Q |
19 |
gaaccggttcaagtataggagaattctataactgctgaatcagtccctcagtgtcaacatcatttcgctcaacaatatcaataacattttacaatgggaa |
118 |
Q |
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| T |
15375409 |
gaaccggttcaagtataggagaattctataactgctgaatcagtccctcagtgtcaacatcatttcgctcaacaatatcaataacattttacaatgggaa |
15375508 |
T |
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| Q |
119 |
atgaaatgaggtacctgactttattactgcaccttccgtcacaatttccttcttatttatattcacggcgcctttcgttt |
198 |
Q |
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| T |
15375509 |
atgaaatgaggtacctgactttattagtgcaccttccgtcacaatttccttctcttttatattcacggcgtctttcgttt |
15375588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 28299571 - 28299674
Alignment:
| Q |
81 |
tttcgctcaacaatatcaataacattttacaatgggaaatgaaatgaggtacctgactttattactgcaccttccgtcacaatttccttcttatttatat |
180 |
Q |
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| T |
28299571 |
tttcgttcaacaatatcaatgacattctccaatgggaaatgaaatgaggtacctgacttcgttagtgcaccttccttcacaatttcattctcatctatat |
28299670 |
T |
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| Q |
181 |
tcac |
184 |
Q |
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|||| |
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| T |
28299671 |
tcac |
28299674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 28512502 - 28512399
Alignment:
| Q |
81 |
tttcgctcaacaatatcaataacattttacaatgggaaatgaaatgaggtacctgactttattactgcaccttccgtcacaatttccttcttatttatat |
180 |
Q |
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||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |||| || ||||| |
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| T |
28512502 |
tttcgttcaacaatatcaatgacattctccaatgggaaatgaaatgaggtacctgacttcgttagtgcaccttccttcacaatttcattctcatctatat |
28512403 |
T |
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| Q |
181 |
tcac |
184 |
Q |
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|||| |
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| T |
28512402 |
tcac |
28512399 |
T |
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