View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3249_high_3 (Length: 623)
Name: NF3249_high_3
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Complemental strand, 33029877 - 33029272
Alignment:
| Q |
1 |
aattgtttggagagaaaaaggtcaagatatactatagaaaactcaaataaacaattaaaaggatattattatttattaatcagtcgtacaaagtttatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33029877 |
aattgtttggagagaaaaaggtcaagatatactatagaaaactcaaataaacaattaaaaggatattattatttattaatcagtcgtacaaagtttatta |
33029778 |
T |
|
| Q |
101 |
ttgattaatatttagaaaaccaaacaattagattcaaatggttaataagctccatcaaaaataaattgttttggagagtctgagtcaaatcttcgataaa |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
33029777 |
ttgattaatatttagaaaaccaaacaattatattcaaatggttaataagctccaccaaaaataaattatttaggagagtctgagtcaaatcttcaataaa |
33029678 |
T |
|
| Q |
201 |
ataatttttaatcagactttacttttataataaaacactaccagagtt-atttttctttagaaacgaatggttaa---cnnnnnnnnttaatgcttagaa |
296 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||||||||||||| |
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| T |
33029677 |
ataatttttaattagactttacttttataataaaacactaccagaattcatttttctttagaaacgaatggttaacaccaaaaaaaattaatgcttagaa |
33029578 |
T |
|
| Q |
297 |
aatcaaaaggaggtttatgtgggaaaagcgtatatataaagtgttgtagctaggtttctgaattatgaccatggtcggcaaagtacttatataaaaatat |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33029577 |
aatcaaaaggaggtttatgtgggaaaagcgtatatataaagtgttgtagctaggtttctgaattatgaccatggttggcaaagtacttatataaaaatat |
33029478 |
T |
|
| Q |
397 |
aaaaatacaagaacaaagaggggtggcaaattgccaacagcacacactctaattaagagcatccttaatccaaaaacccaatttttgggtaagcatgtat |
496 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33029477 |
aaaaatacaagaacaaagaggggtggcaaattgccaatagcacacactctaattaagagcatccttaatccaaaaacccaatttttgggtaagcatgtat |
33029378 |
T |
|
| Q |
497 |
acacaatttatttttcaactttagtactatcnnnnnnnnnnnnngacaaaaaactttagtactatctaataatcactacatctctcttttttatcattat |
596 |
Q |
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||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33029377 |
acacaatttatatttcaactttagtactatctttttttttttt--acaacaaactttagtactatctaataatcattacatctctcttttttatcattat |
33029280 |
T |
|
| Q |
597 |
attataat |
604 |
Q |
| |
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|||||||| |
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| T |
33029279 |
attataat |
33029272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 26400698 - 26400637
Alignment:
| Q |
125 |
caattagattcaaatggttaataagctccatcaaaa-ataaattgttttggagagtctgagt |
185 |
Q |
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||||| ||||||| |||||||||||||| ||||||| |||||||||| |||||| |||||| |
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| T |
26400698 |
caatttgattcaagtggttaataagctcaatcaaaagataaattgttaaggagagcctgagt |
26400637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 4662034 - 4661990
Alignment:
| Q |
126 |
aattagattcaaatggttaataagctccatcaaaaataaattgtt |
170 |
Q |
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| T |
4662034 |
aattagattcaaatggttaatgagttccatcaaagatgaattgtt |
4661990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 45754187 - 45754228
Alignment:
| Q |
118 |
aaccaaacaattagattcaaatggttaataagctccatcaaa |
159 |
Q |
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||||||||||||| |||||| ||||||||||| ||||||||| |
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| T |
45754187 |
aaccaaacaattaaattcaagtggttaataagttccatcaaa |
45754228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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