View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3249_high_4 (Length: 615)
Name: NF3249_high_4
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 592; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 1 - 600
Target Start/End: Original strand, 43452990 - 43453589
Alignment:
| Q |
1 |
taggagggtaacaccaaaaagtgcaggtcttcgagcagaatcggttttgttgacaaacaatggtccttttagggaattttataagttaggagatgaactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43452990 |
taggagggtaacaccaaaaagtgcaggtcttcgagcagaatcggttttgttgacaaacaatggtccttttagggaattttataagttaggagatgaactt |
43453089 |
T |
|
| Q |
101 |
gggaaaggaaagtttggaactacttcactttgtttggagaaatcaaccgggaagacatacgcatgcaaagcaataccaaaggtaaaattgtttagagaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43453090 |
gggaaaggaaagtttggaactacttcactttgtttggagaaatcaaccaggaagacatacgcatgcaaagcaataccaaaggtaaaattgtttagagaga |
43453189 |
T |
|
| Q |
201 |
atgatatagaggatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatccggtcgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43453190 |
atgatatagaggatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatccggtcgt |
43453289 |
T |
|
| Q |
301 |
tgtttatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagagaaaggctgctaaactcgcaaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43453290 |
tgtttatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagagaaaggctgctaaactcgcaaga |
43453389 |
T |
|
| Q |
401 |
acgattgttaatgttgttgaggcttgtcactcatgtggagttatgcatcgtgatcttaagcctgaaaatttcctttttgttgatggagatgaagattcca |
500 |
Q |
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| T |
43453390 |
acgattgttaatgttgttgaggcttgtcactcacgtggagttatgcatcgtgatcttaagcctgaaaatttcctttttgttgatggagatgaagattcca |
43453489 |
T |
|
| Q |
501 |
ctcttatggcaattgattttggactgtccattttcttcaaaccaggtttggaaataatccccttctccaaattataccaatctctaaccattgttctttt |
600 |
Q |
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| T |
43453490 |
ctcttatggcaattgattttggactgtccattttcttcaaaccaggtttggaaataatccccttctccaaattataccaatctctaaccattgttctttt |
43453589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 5 - 592
Target Start/End: Original strand, 43462433 - 43463020
Alignment:
| Q |
5 |
agggtaacaccaaaaagtgcaggtcttcgagcagaatcggttttgttgacaaacaatggtccttttagggaattttataagttaggagatgaacttggga |
104 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||| ||||| ||| ||||||||||||||||||| |
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| T |
43462433 |
agggtaacagcaaaaagtgcaggtcttcgagaagaatcaattttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggag |
43462532 |
T |
|
| Q |
105 |
aaggaaagtttggaactacttcactttgtttggagaaatcaaccgggaagacatacgcatgcaaagcaataccaaaggtaaaattgtttagagagaatga |
204 |
Q |
| |
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| T |
43462533 |
aaggggaatttggaactacttcactttgtttggagaaatcaaccgggaaaacgtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatga |
43462632 |
T |
|
| Q |
205 |
tatagaggatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatccggtcgttgtt |
304 |
Q |
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| T |
43462633 |
tgtagaggatgtgaggagggaaattaagataatgcatcacttggttgggagtctaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtt |
43462732 |
T |
|
| Q |
305 |
tatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagagaaaggctgctaaactcgcaagaacga |
404 |
Q |
| |
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|||||||| |||||||||||| ||||||||||||||||||| ||||||||| |||| | | ||| |||| |||||| |||||||| |||||||| | |
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| T |
43462733 |
tatattgtcatggaattatgtaaaggaggtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaagaacta |
43462832 |
T |
|
| Q |
405 |
ttgttaatgttgttgaggcttgtcactcatgtggagttatgcatcgtgatcttaagcctgaaaatttcctttttgttgatggagatgaagattccactct |
504 |
Q |
| |
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| |||| |||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| |
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| T |
43462833 |
tcgttagtgttgttgagacttgtcactcacgtggagttatgcattgtgatcttaagcctgaaaattttctttttgttgatggacatgaagattcaactct |
43462932 |
T |
|
| Q |
505 |
tatggcaattgattttggactgtccattttcttcaaaccaggtttggaaataatccccttctccaaattataccaatctctaaccatt |
592 |
Q |
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| T |
43462933 |
taaagcaattgattttggattgtctagtttcttcaaaccaggtatggaaataatccccttctccaatttataccaatctctaaccatt |
43463020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 212 - 481
Target Start/End: Complemental strand, 24421081 - 24420812
Alignment:
| Q |
212 |
gatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatccggtcgttgtttatattg |
311 |
Q |
| |
|
||||||||||| |||||| | || ||||||||||| | ||| | | | |||||||| || || || | ||||| ||| ||| | || | |||| || ||| |
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| T |
24421081 |
gatgtgaggagagagattcagattatgcatcacttggctggcagttcgaatgtgatttcgattaaggaagcttctgaggatgctgttgctgttcatgttg |
24420982 |
T |
|
| Q |
312 |
taatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagagaaaggctgctaaactcgcaagaacgattgttaa |
411 |
Q |
| |
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| T |
24420981 |
ttatggagttgtgtgcaggtggtgaactttttgataggattgtggaaagagggcattatacagaaagaaaggcggcgaaacttgcaaggactattgttgg |
24420882 |
T |
|
| Q |
412 |
tgttgttgaggcttgtcactcatgtggagttatgcatcgtgatcttaagcctgaaaatttcctttttgtt |
481 |
Q |
| |
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|||| || || | ||||| || ||| || |||||||| ||||||||||| || ||||| ||||||||| |
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| T |
24420881 |
tgttattcagtcatgtcattctcttggtgtaatgcatcgcgatcttaagccggagaattttctttttgtt |
24420812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 472
Target Start/End: Original strand, 8403596 - 8403628
Alignment:
| Q |
440 |
gttatgcatcgtgatcttaagcctgaaaatttc |
472 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |
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| T |
8403596 |
gttatgcatcgtgatcttaagcctgagaatttc |
8403628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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