View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3249_high_5 (Length: 522)

Name: NF3249_high_5
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3249_high_5
NF3249_high_5
[»] chr2 (20 HSPs)
chr2 (52-238)||(15590311-15590497)
chr2 (238-397)||(32599247-32599408)
chr2 (239-397)||(13696965-13697125)
chr2 (239-397)||(17823601-17823761)
chr2 (239-397)||(36272661-36272821)
chr2 (237-392)||(33555360-33555518)
chr2 (237-397)||(36709190-36709351)
chr2 (237-397)||(40095285-40095446)
chr2 (238-322)||(14242523-14242607)
chr2 (239-392)||(42061237-42061386)
chr2 (239-310)||(4434592-4434663)
chr2 (239-277)||(23860198-23860236)
chr2 (330-397)||(23860257-23860324)
chr2 (238-310)||(40216519-40216592)
chr2 (349-397)||(14242627-14242675)
chr2 (338-397)||(3121632-3121691)
chr2 (338-385)||(40216443-40216490)
chr2 (237-283)||(5563071-5563117)
chr2 (234-304)||(31220678-31220749)
chr2 (365-397)||(14945864-14945896)
[»] chr1 (22 HSPs)
chr1 (237-397)||(1994975-1995136)
chr1 (228-397)||(29637199-29637370)
chr1 (237-397)||(2402923-2403085)
chr1 (237-397)||(44797465-44797626)
chr1 (231-397)||(27325619-27325788)
chr1 (237-392)||(32267463-32267620)
chr1 (238-320)||(40030887-40030969)
chr1 (247-397)||(1673391-1673543)
chr1 (238-310)||(15066019-15066092)
chr1 (237-310)||(19989347-19989420)
chr1 (338-397)||(46845757-46845816)
chr1 (237-305)||(526907-526976)
chr1 (237-305)||(39858452-39858521)
chr1 (238-310)||(47571562-47571635)
chr1 (238-305)||(13276473-13276541)
chr1 (338-397)||(527000-527059)
chr1 (338-397)||(6487750-6487809)
chr1 (338-397)||(26040992-26041051)
chr1 (338-397)||(29731210-29731269)
chr1 (240-310)||(29731298-29731369)
chr1 (338-383)||(47571664-47571709)
chr1 (238-305)||(40314197-40314265)
[»] chr5 (12 HSPs)
chr5 (238-397)||(36890399-36890559)
chr5 (238-397)||(13988269-13988430)
chr5 (237-397)||(11247214-11247376)
chr5 (237-310)||(20151485-20151558)
chr5 (237-287)||(12248407-12248457)
chr5 (238-310)||(8076365-8076438)
chr5 (239-287)||(43100208-43100256)
chr5 (239-310)||(1447748-1447818)
chr5 (338-397)||(12248295-12248354)
chr5 (338-397)||(15285351-15285410)
chr5 (339-385)||(43100310-43100356)
chr5 (237-305)||(15285434-15285503)
[»] chr4 (23 HSPs)
chr4 (239-397)||(25164471-25164631)
chr4 (239-397)||(37605691-37605851)
chr4 (238-397)||(17044025-17044185)
chr4 (239-397)||(45995895-45996054)
chr4 (238-397)||(55281230-55281391)
chr4 (238-397)||(43749114-43749277)
chr4 (231-322)||(39631002-39631093)
chr4 (239-397)||(3287106-3287262)
chr4 (237-397)||(24059133-24059293)
chr4 (238-287)||(51293081-51293130)
chr4 (239-397)||(5817380-5817540)
chr4 (236-397)||(51579602-51579765)
chr4 (237-298)||(5208425-5208486)
chr4 (442-493)||(40309432-40309483)
chr4 (442-493)||(40328973-40329024)
chr4 (251-309)||(32525034-32525092)
chr4 (237-287)||(14149958-14150008)
chr4 (330-392)||(36851254-36851316)
chr4 (340-397)||(51579342-51579399)
chr4 (238-310)||(40947103-40947175)
chr4 (239-310)||(48525436-48525508)
chr4 (354-397)||(25784025-25784068)
chr4 (238-304)||(25783908-25783974)
[»] chr6 (13 HSPs)
chr6 (238-397)||(9045855-9046015)
chr6 (239-397)||(34792651-34792811)
chr6 (237-397)||(14313985-14314146)
chr6 (237-392)||(1244554-1244711)
chr6 (237-285)||(9521810-9521858)
chr6 (338-397)||(23915994-23916053)
chr6 (239-287)||(16718131-16718179)
chr6 (236-310)||(12748322-12748397)
chr6 (235-305)||(23916077-23916148)
chr6 (347-397)||(29429606-29429656)
chr6 (340-397)||(12748233-12748290)
chr6 (234-310)||(32720469-32720546)
chr6 (365-397)||(9521945-9521977)
[»] chr7 (18 HSPs)
chr7 (237-397)||(46576240-46576402)
chr7 (231-397)||(30922702-30922870)
chr7 (238-389)||(33496529-33496682)
chr7 (240-309)||(52049-52118)
chr7 (239-397)||(38754897-38755055)
chr7 (243-397)||(48460681-48460830)
chr7 (235-310)||(38349455-38349531)
chr7 (238-310)||(28713787-28713860)
chr7 (239-310)||(11752707-11752781)
chr7 (237-310)||(13768479-13768554)
chr7 (342-397)||(28713699-28713754)
chr7 (338-397)||(38349560-38349619)
chr7 (236-309)||(43359083-43359157)
chr7 (241-279)||(43659258-43659296)
chr7 (237-310)||(47480012-47480086)
chr7 (237-305)||(31741148-31741217)
chr7 (241-309)||(37536317-37536386)
chr7 (239-283)||(42974395-42974439)
[»] chr3 (13 HSPs)
chr3 (239-397)||(38247820-38247979)
chr3 (237-397)||(9271132-9271296)
chr3 (241-397)||(12224006-12224163)
chr3 (239-389)||(48034808-48034961)
chr3 (239-397)||(50989225-50989385)
chr3 (239-397)||(51092357-51092517)
chr3 (232-397)||(8496728-8496896)
chr3 (238-309)||(46135636-46135708)
chr3 (238-397)||(23004778-23004938)
chr3 (237-397)||(54713546-54713708)
chr3 (239-310)||(36674519-36674591)
chr3 (330-397)||(33288154-33288221)
chr3 (239-308)||(40725959-40726029)
[»] chr8 (15 HSPs)
chr8 (237-397)||(43065903-43066064)
chr8 (238-397)||(14342186-14342349)
chr8 (238-397)||(1993638-1993800)
chr8 (237-322)||(4076767-4076852)
chr8 (239-310)||(11904963-11905035)
chr8 (338-397)||(4077062-4077121)
chr8 (338-397)||(8368472-8368531)
chr8 (338-397)||(11904875-11904934)
chr8 (239-305)||(28898100-28898167)
chr8 (230-310)||(31774837-31774917)
chr8 (236-310)||(35200666-35200741)
chr8 (239-372)||(5749029-5749162)
chr8 (339-385)||(10592010-10592056)
chr8 (249-310)||(10592086-10592148)
chr8 (241-310)||(16465610-16465679)
[»] scaffold0933 (1 HSPs)
scaffold0933 (237-397)||(3054-3213)
[»] scaffold0533 (1 HSPs)
scaffold0533 (239-389)||(10232-10383)


Alignment Details
Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 52 - 238
Target Start/End: Complemental strand, 15590497 - 15590311
Alignment:
Q  52 aatggaagaaattactatccaaaatagttgaagatggacccttaatagaggattttactaaaaattatatgggtaaattgtggatttaaaattactatcc 151  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| || |||| |||||||||||||||    
T  15590497 aatggaaggaattactatccaaaatagttgaagatggatccttaatagaggattttactaaaaatgataagggtaagttatggaattaaaattactatcc 15590398  T
Q  152 aaaacagtcctttctattatagagtttaacaaaattaattacttttaagtgtctttcaattaatctgttccttacaatttaaaataa 238  Q
    ||||||| | ||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15590397 aaaacagacatttatattacagagtttaacaaaactaattacttttaagtgtttttcaattaatctgttccttacaatttaaaataa 15590311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 238 - 397
Target Start/End: Original strand, 32599247 - 32599408
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtg-gg 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||  ||||||||||       ||||| ||    
T  32599247 aggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgacagacaatacatgtgagtttttttgtgtgtgg 32599346  T
Q  337 a-ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  32599347 agggaccacaaggacacttgtcaaaattatgtgtggatgtacaagtggtacatgccacctaa 32599408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 239 - 397
Target Start/End: Original strand, 13696965 - 13697125
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtga--gnnnnnnngtgtggg 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||  |||||||||          |||||||    
T  13696965 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtggg 13697064  T
Q  337 aggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     | |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  13697065 ggaaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 13697125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 239 - 397
Target Start/End: Complemental strand, 17823761 - 17823601
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgag--nnnnnnngtgtggg 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||  ||||||||||         |||||||    
T  17823761 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtggg 17823662  T
Q  337 aggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     ||||||||||||||||| |||||||| | |||||||||||||||| ||||| ||||||||    
T  17823661 gggaccacaaggacacttatcaaaattgtatgtgggtgtacaagtgatacataccatctaa 17823601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 239 - 397
Target Start/End: Original strand, 36272661 - 36272821
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgag--nnnnnnngtgtggg 336  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||| ||||  ||||||||||         ||||| |    
T  36272661 ggataatgtttcatgtacacacttttttccatatacacattgtaccactccatgtgagagtgtgtgaaagacaatacatgtgagtttttttgtgtgtgtg 36272760  T
Q  337 aggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||    
T  36272761 gggaccacaaggacacttgtcaaaattgtgtgtgggtgtataagtggtacatgccacctaa 36272821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 237 - 392
Target Start/End: Original strand, 33555360 - 33555518
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgag---nnnnnnngtgt 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| ||||  ||||||||||          ||||    
T  33555360 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagaatgtgtgacagacaatacatgtgagttttttttttgtgt 33555459  T
Q  334 gggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgcca 392  Q
    ||| ||||||||| |||||||||||||||| |||||  |||||||||||||||||||||    
T  33555460 ggggggaccacaatgacacttgtcaaaattgtgtgtaagtgtacaagtggtacatgcca 33555518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 237 - 397
Target Start/End: Original strand, 36709190 - 36709351
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgag-nnnnnnngtgtgg 335  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||| ||||||| ||||  ||||||||||        ||||||    
T  36709190 aaggataatgtttcatgtacacatttttttccatacaaacattgtaccactccatatgagaatgtgtgacagacaatacatgtgagttttttgtgtgtgg 36709289  T
Q  336 gaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    | ||||||||| |||| ||||||||||| |||||||||||| ||||||||||| ||| ||||    
T  36709290 ggggaccacaatgacatttgtcaaaattgtgtgtgggtgtataagtggtacataccacctaa 36709351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 237 - 397
Target Start/End: Complemental strand, 40095446 - 40095285
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgag--nnnnnnngtgtg 334  Q
    ||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||  |||||||||||||||||  ||||||| ||         |||||    
T  40095446 aaggataatgtttcatgtacaca-ttttttccatacatacactgtaccactctatgcgagagtgtgtgagagacaatacatgtaagtttttttgtgtgtg 40095348  T
Q  335 ggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    || ||||||||| |||||||||||||||| | ||||| ||||||||||||||||| |||||||    
T  40095347 gggggaccacaatgacacttgtcaaaattgtatgtggatgtacaagtggtacatgtcatctaa 40095285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 14242523 - 14242607
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgag 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| |  ||||||||||    
T  14242523 aggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtctgagaggcaatacatgtgag 14242607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 392
Target Start/End: Original strand, 42061237 - 42061386
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccc--tacatgtgagnnnnnnn---gtgt 333  Q
    ||||||||||||||||||||||||||||||||||||         ||||| ||||||||||||||||||||  |  ||||||||||          ||||    
T  42061237 ggataatgtttcatgtacacacttttttccatacac---------cactccatatgagagtgtgtgagagagacaatacatgtgagttttttgtgtgtgt 42061327  T
Q  334 gggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgcca 392  Q
    ||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  42061328 ggggggaccacaaggacacttgtcaaaattgtatgtgggtgtacaagtggtacatgcca 42061386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 4434592 - 4434663
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagac 310  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||||||   || ||||| ||||||||||||    
T  4434592 ggataatgtttcatgaacactattttttccatacacacattgtaccacctcatgtgagaatgtgtgagagac 4434663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 23860198 - 23860236
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacaca 277  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23860198 ggataatgtttcatgtacacacttttttccatacacaca 23860236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 397
Target Start/End: Original strand, 23860257 - 23860324
Alignment:
Q  330 gtgtgggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    ||||||| ||| |||||| ||||||||||||||  |||||| || |||||||||||||||||| ||||    
T  23860257 gtgtggggggatcacaagaacacttgtcaaaatagtgtgtgagtatacaagtggtacatgccacctaa 23860324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 40216592 - 40216519
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccac-tctatatgagagtgtgtgagagac 310  Q
    |||||||||||||||| |||| ||||  || |||||||||||||||||| || || ||||||||| ||||||||    
T  40216592 aggataatgtttcatgaacaccctttcctctatacacacattgtaccacttccatgtgagagtgtttgagagac 40216519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 14242627 - 14242675
Alignment:
Q  349 acacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    ||||||||||||||| |||||||||||||| ||||||||| ||| ||||    
T  14242627 acacttgtcaaaattgtgtgtgggtgtacaggtggtacataccacctaa 14242675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 3121691 - 3121632
Alignment:
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||||| |||||| ||||| |||| ||| || ||||| ||||||||||||||||||||    
T  3121691 ggaccacatggacacatgtcacaattgtgtatgagtgtataagtggtacatgccatctaa 3121632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 385
Target Start/End: Complemental strand, 40216490 - 40216443
Alignment:
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggta 385  Q
    |||||||| |||||| ||||| |||||| |||||||||||||||||||    
T  40216490 ggaccacatggacacatgtcacaattatatgtgggtgtacaagtggta 40216443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 5563117 - 5563071
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtac 283  Q
    ||||||||||||| ||||| ||| ||||||| |||||||||||||||    
T  5563117 aaggataatgttttatgtatacatttttttctatacacacattgtac 5563071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 31220749 - 31220678
Alignment:
Q  234 aataaggataatgtttcatgtacacactttttt--ccatacacacattgtaccactctatatgagagtgtgtg 304  Q
    |||||||||||||||||||| |||| ||||| |  ||||||||| |||||||| | | |||||||||||||||    
T  31220749 aataaggataatgtttcatggacacccttttctcgccatacacaaattgtacc-ccccatatgagagtgtgtg 31220678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 397
Target Start/End: Original strand, 14945864 - 14945896
Alignment:
Q  365 tgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||||||||||||||||||||||||| ||||    
T  14945864 tgtgtgggtgtacaagtggtacatgccacctaa 14945896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 237 - 397
Target Start/End: Complemental strand, 1995136 - 1994975
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtg-g 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||  ||||||||||       ||||| |    
T  1995136 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtg 1995037  T
Q  336 gaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  1995036 gaggaccacaaagacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 1994975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 228 - 397
Target Start/End: Original strand, 29637199 - 29637370
Alignment:
Q  228 atttaaaataaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnn 327  Q
    |||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||| |||||||  ||||| ||||         
T  29637199 atttaaaagaaagataatgtttcatgtacacactttttttcatacacacattgtaccaccacatatgagagtgtgagagagacaatacatatgagttttt 29637298  T
Q  328 nngtgt--gggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
      ||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  29637299 ttgtgtgtgggaggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 29637370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 237 - 397
Target Start/End: Original strand, 2402923 - 2403085
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgag--nnnnnnngtgtg 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| |||||||  ||||||||||         |||||    
T  2402923 aaggataatgtttcatgtacacacttttttccatacacacattgtaccattccatgtgagagtgtgcgagagacaatacatgtgagtttttttttgtgtg 2403022  T
Q  335 ggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    || |||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  2403023 gggggaccacaagaacacttttcaaaattgtgtgtgggtgtacaagtggtacatgccatctaa 2403085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 237 - 397
Target Start/End: Original strand, 44797465 - 44797626
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtg-tgg 335  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||  || ||||||||||||||||||  ||||||||||       ||| | |    
T  44797465 aaggataatgtttcatgtacacacttttttctatacacacattgtaccacttcatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtttg 44797564  T
Q  336 gaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    | ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  44797565 ggggaccacaaggacacttatcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 44797626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 231 - 397
Target Start/End: Original strand, 27325619 - 27325788
Alignment:
Q  231 taaaataaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatg-agagtgtgtgagagaccctacatgtga--gnnnnn 327  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||  |||||||||            
T  27325619 taaaattaggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgaagagtgtgtgagagacaatacatgtgacttttttt 27325718  T
Q  328 nngtgtgggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
      ||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  27325719 gtgtgtgggggaaccacaaggacacttatcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 27325788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 237 - 392
Target Start/End: Original strand, 32267463 - 32267620
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnng--tgtg 334  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||| |  ||||||||||       |  ||||    
T  32267463 aaggataatatttcatgtacacacttttttccatacacacattgtactactccatgtgagagtgtgtgagagccaatacatgtgagtttttttgtatgtg 32267562  T
Q  335 ggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgcca 392  Q
    | ||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||    
T  32267563 gaaggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaaattgtacatgcca 32267620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 40030969 - 40030887
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtg 320  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||  ||||||||    
T  40030969 aggataatgtttcatgtacacactttttttcatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtg 40030887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 247 - 397
Target Start/End: Complemental strand, 1673543 - 1673391
Alignment:
Q  247 tttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtg--ggaggaccac 344  Q
    ||||||||||||||||||||||||||||||||||||||| |  || | ||||||| ||||||||  ||||| ||||       || ||  || | |||||    
T  1673543 tttcatgtacacacttttttccatacacacattgtaccatttcatgtaagagtgtatgagagacaatacatatgagtttttttgtatgtaggggaaccac 1673444  T
Q  345 aaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  1673443 aaggacacttatcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 1673391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 15066019 - 15066092
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactct-atatgagagtgtgtgagagac 310  Q
    |||||||||||||||| |||| |||||||||||||| ||| ||||||||||| || ||||||||||||||||||    
T  15066019 aggataatgtttcatgaacactcttttttccatacatacaatgtaccactctcatgtgagagtgtgtgagagac 15066092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 19989420 - 19989347
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactct-atatgagagtgtgtgagagac 310  Q
    ||||||||||||||||  |||| ||||| || ||||||||||||||||||||| || ||||||||||||||||||    
T  19989420 aaggataatgtttcatagacactcttttctc-atacacacattgtaccactctcatgtgagagtgtgtgagagac 19989347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 397
Target Start/End: Original strand, 46845757 - 46845816
Alignment:
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||||| |||||| ||||| |||| ||| |||||||| ||||||||||||||||||||    
T  46845757 ggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccatctaa 46845816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 526907 - 526976
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccac-tctatatgagagtgtgtga 305  Q
    ||||||||||||||||| |||| ||||| |||||||||||  |||||||| || || |||||||||||||    
T  526907 aaggataatgtttcatgaacacccttttctccatacacactatgtaccacttccatgtgagagtgtgtga 526976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 39858521 - 39858452
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccact-ctatatgagagtgtgtga 305  Q
    ||||||||||||||||| |||| ||||| |||||||||||  ||||||||| | ||||||||| ||||||    
T  39858521 aaggataatgtttcatgaacacccttttctccatacacactatgtaccactcccatatgagagagtgtga 39858452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 47571562 - 47571635
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccac-tctatatgagagtgtgtgagagac 310  Q
    |||||||||||||||| |||| ||||  || |||||||||||||||||| || || ||||||||| ||||||||    
T  47571562 aggataatgtttcatgaacaccctttcctctatacacacattgtaccacttccatgtgagagtgtttgagagac 47571635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 13276473 - 13276541
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccact-ctatatgagagtgtgtga 305  Q
    |||||||||||||||| |||| ||||| |||||||||||  ||||||||| | || |||||||||||||    
T  13276473 aggataatgtttcatgaacacccttttctccatacacactatgtaccactcccatgtgagagtgtgtga 13276541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 397
Target Start/End: Original strand, 527000 - 527059
Alignment:
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||||| |||||| ||||| |||| ||| |||||||| ||||||||||||||| ||||    
T  527000 ggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaa 527059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 6487809 - 6487750
Alignment:
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||||  |||||| ||||| |||| ||||||| |||||||||||||||||||| ||||    
T  6487809 ggaccacgtggacacatgtcacaattgtgtgtggatgtacaagtggtacatgccacctaa 6487750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 26041051 - 26040992
Alignment:
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||||  |||||| ||||| |||| | |||||||||||||||||||||||||| ||||    
T  26041051 ggaccacgtggacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaa 26040992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 29731269 - 29731210
Alignment:
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||||| |||||| ||||| |||||| ||||||||||| ||||||| |||||| ||||    
T  29731269 ggaccacatggacacatgtcacaattatatgtgggtgtactagtggtatatgccacctaa 29731210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 29731369 - 29731298
Alignment:
Q  240 gataatgtttcatgtacacacttttttccatacacacattgtaccac-tctatatgagagtgtgtgagagac 310  Q
    |||||||||||||| |||| ||||| || |||||||||||||| ||| || || ||||||||| ||||||||    
T  29731369 gataatgtttcatgaacacccttttctctatacacacattgtatcacttccatgtgagagtgtttgagagac 29731298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 47571664 - 47571709
Alignment:
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtgg 383  Q
    |||||||| |||||| ||||| |||||| |||||||||||||||||    
T  47571664 ggaccacatggacacatgtcacaattatatgtgggtgtacaagtgg 47571709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 40314265 - 40314197
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccact-ctatatgagagtgtgtga 305  Q
    |||||||||||||||| ||||  ||||||||||||| ||  | ||||||| | ||||||||||||||||    
T  40314265 aggataatgtttcatgaacaccattttttccatacatactatataccactcccatatgagagtgtgtga 40314197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 238 - 397
Target Start/End: Complemental strand, 36890559 - 36890399
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtg-gg 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||  ||||||||||       ||||| ||    
T  36890559 aggataatgtttcatgtacacacttttttccatacacacattgtaccactcgatgtgagagtgtatgagagacaatacatgtgagtttttttgtgtgtgg 36890460  T
Q  337 aggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  36890459 gggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 36890399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 238 - 397
Target Start/End: Complemental strand, 13988430 - 13988269
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtga--gnnnnnnngtgtgg 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||  |||||||||          ||||||    
T  13988430 aggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtgg 13988331  T
Q  336 gaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  13988330 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 13988269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 237 - 397
Target Start/End: Complemental strand, 11247376 - 11247214
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtg-- 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||  ||||||||||       |||||      
T  11247376 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgta 11247277  T
Q  335 ggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    || ||| ||||| |||| ||||||||||| ||||||| ||||||||| ||| |||||||||||    
T  11247276 gggggatcacaaagacatttgtcaaaattgtgtgtggatgtacaagtagtatatgccatctaa 11247214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 20151558 - 20151485
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagac 310  Q
    ||||||||| ||||||||||||  ||||||||||||| ||||| |||||| | || ||||||||||||||||||    
T  20151558 aaggataatatttcatgtacacctttttttccatacatacattataccaccccatgtgagagtgtgtgagagac 20151485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 12248457 - 12248407
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccact 287  Q
    ||||||||||||||||| |||| ||||| || |||||||||||||||||||    
T  12248457 aaggataatgtttcatgaacacccttttctctatacacacattgtaccact 12248407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 8076438 - 8076365
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccac-tctatatgagagtgtgtgagagac 310  Q
    |||||||||||||||| |||| ||||| || ||||| |||||||||||| || || ||||||||| ||||||||    
T  8076438 aggataatgtttcatgaacacccttttctctatacatacattgtaccacttccatgtgagagtgtttgagagac 8076365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 43100208 - 43100256
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccact 287  Q
    ||||||||||||||| |||| ||||| || |||||||||||||||||||    
T  43100208 ggataatgtttcatgaacacccttttctctatacacacattgtaccact 43100256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 1447748 - 1447818
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagac 310  Q
    ||||||||||||||| |||| |||||||| |||||||| ||||||||  | || ||||||||| ||||||||    
T  1447748 ggataatgtttcatgaacac-cttttttctatacacacgttgtaccatccaatgtgagagtgtatgagagac 1447818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 12248354 - 12248295
Alignment:
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||||| |||||| ||||| |||||| ||||| ||||||||||||| |||||| ||||    
T  12248354 ggaccacatggacacatgtcacaattatatgtggatgtacaagtggtatatgccacctaa 12248295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 15285410 - 15285351
Alignment:
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||||| |||||| ||||| |||| ||| || ||||| ||||||||||||||||||||    
T  15285410 ggaccacatggacacatgtcacaattgtgtatgagtgtataagtggtacatgccatctaa 15285351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 385
Target Start/End: Original strand, 43100310 - 43100356
Alignment:
Q  339 gaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggta 385  Q
    ||||||| |||||| ||||| |||||| |||||||||||||||||||    
T  43100310 gaccacatggacacatgtcacaattatatgtgggtgtacaagtggta 43100356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 15285503 - 15285434
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccact-ctatatgagagtgtgtga 305  Q
    ||||||||||||||||| |||| ||||| | |||||||||  ||||||||| | || |||||||||||||    
T  15285503 aaggataatgtttcatgaacacccttttctgcatacacactatgtaccactcccatgtgagagtgtgtga 15285434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 8e-47; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 239 - 397
Target Start/End: Original strand, 25164471 - 25164631
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtg-gga 337  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||  ||||||||||       ||||| |||    
T  25164471 ggataatgtttcatgtacacacttttttgcatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtgga 25164570  T
Q  338 gg-accacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  25164571 ggaaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 25164631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 239 - 397
Target Start/End: Original strand, 37605691 - 37605851
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtga--gnnnnnnngtgtggg 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||  |||||||||          |||||||    
T  37605691 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagggacaatacatgtgactttttttgtgtgtggg 37605790  T
Q  337 aggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  37605791 gggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 37605851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 238 - 397
Target Start/End: Complemental strand, 17044185 - 17044025
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtg-gg 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||  |||||| ||        ||||| ||    
T  17044185 aggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgggactttttttgtgtgtgg 17044086  T
Q  337 aggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     | |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  17044085 ggaaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 17044025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 239 - 397
Target Start/End: Original strand, 45995895 - 45996054
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtg-gga 337  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||  ||||||||||       ||||| ||     
T  45995895 ggataatgtttcatgtacacatttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtggg 45995994  T
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  45995995 agaccacaagaacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 45996054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 238 - 397
Target Start/End: Complemental strand, 55281391 - 55281230
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtga--gnnnnnnngtgtgg 335  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||  |||||||||          ||||||    
T  55281391 aggataatgtttcatgtacacacttttttccatacatacattgtaccactccatgtgagaatgtgtgagagacaatacatgtgactttttttgtgtgtgg 55281292  T
Q  336 gaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  55281291 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 55281230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 238 - 397
Target Start/End: Complemental strand, 43749277 - 43749114
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtg--- 334  Q
    ||||||||||||||||||||||||||||| |||||| | |||||||||||| || | |||||||||||| |||  || |||||||       |||||       
T  43749277 aggataatgtttcatgtacacactttttttcatacatatattgtaccactccatgtaagagtgtgtgagggacaatatatgtgagcttttttgtgtgtgt 43749178  T
Q  335 ggagg-accacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43749177 ggagggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccacctaa 43749114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 231 - 322
Target Start/End: Original strand, 39631002 - 39631093
Alignment:
Q  231 taaaataaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgag 322  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  39631002 taaaaaaaggataatgtttcatgtacatacttttttccatatacacattgtaccactctatgtgagagtgtgtgagagacaatacatgtgag 39631093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 239 - 397
Target Start/End: Complemental strand, 3287262 - 3287106
Alignment:
Q  239 ggataatgtttcatgtacacactttttt-ccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtggga 337  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||   |||  ||          ||||||      
T  3287262 ggataatgtttcatgtacacactttttttccatacacacattgtaccactccatgtgagagtgtgtgagagataatacgagt---tttttttgtgtggag 3287166  T
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     |||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||    
T  3287165 agaccacaaggactcttgtcaaaattgtgtgtgggtgtacaagtggtacataccatctaa 3287106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 397
Target Start/End: Original strand, 24059133 - 24059293
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtggg 336  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||| | || | ||||||||| ||||||  || |||  |        ||||| |    
T  24059133 aaggataatgttttatgtacacactttcttccatacacacattgtaccaccccatgtaagagtgtgtaagagacaataaatgatattttttttgtgtgtg 24059232  T
Q  337 aggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     | |||||| |||||| ||||| |||| | ||||||||||||| || ||||||||||||||    
T  24059233 ggaaccacatggacacatgtcacaattgtatgtgggtgtacaaatgatacatgccatctaa 24059293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 51293081 - 51293130
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccact 287  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51293081 aggataatgtttcatgtacacactttttttcatacacacattgtaccact 51293130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 397
Target Start/End: Original strand, 5817380 - 5817540
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtgggag 338  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||| | || | | |||||||  |||||  || || ||||       ||||| | |    
T  5817380 ggataatgtttcatgtacatccttttctccatacacacattgtaccaccccatgtaaaagtgtgtaggagacaataaatatgagttttttggtgtgtgtg 5817479  T
Q  339 g--accacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |  |||||| |||||| ||||| |||| |||||||||||||||||||||||||||| ||||    
T  5817480 gggaccacatggacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaa 5817540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 236 - 397
Target Start/End: Complemental strand, 51579765 - 51579602
Alignment:
Q  236 taaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnng--tgt 333  Q
    |||||||||||||| ||||| ||||||| || ||||||||||||||||||| | || ||||||||||| ||||||  || |||||||       |  |||    
T  51579765 taaggataatgttttatgtaaacactttctttcatacacacattgtaccaccccatgtgagagtgtgtaagagacaataaatgtgagtttttttgtatgt 51579666  T
Q  334 gggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    | | | | |||| |||||| ||||| |||| | | |||||||||||||||||||||||| ||||    
T  51579665 gtgggaatcacatggacacatgtcacaattgtatttgggtgtacaagtggtacatgccacctaa 51579602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 5208486 - 5208425
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagag 298  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||||||| || ||||||    
T  5208486 aaggataatgttttatgtacacactttttttcatacacatattgtaccactccatgtgagag 5208425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 493
Target Start/End: Original strand, 40309432 - 40309483
Alignment:
Q  442 gtaactgtagtcatgtcttgtattaaaaatatagtaactcaccaaaattaga 493  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||||||||    
T  40309432 gtaattgttgtcatgtcttgtattaaaaatatagtaagtcaccaaaattaga 40309483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 493
Target Start/End: Original strand, 40328973 - 40329024
Alignment:
Q  442 gtaactgtagtcatgtcttgtattaaaaatatagtaactcaccaaaattaga 493  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||||||||    
T  40328973 gtaattgttgtcatgtcttgtattaaaaatatagtaagtcaccaaaattaga 40329024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 32525034 - 32525092
Alignment:
Q  251 atgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagaga 309  Q
    ||||||||  |||||||||||||||||||||| ||| | ||||||||||||||||||||    
T  32525034 atgtacacctttttttccatacacacattgtatcaccccatatgagagtgtgtgagaga 32525092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 14149958 - 14150008
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccact 287  Q
    ||||||||||||||||| |||| ||||| || |||||||||||||||||||    
T  14149958 aaggataatgtttcatgaacacccttttctctatacacacattgtaccact 14150008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 392
Target Start/End: Complemental strand, 36851316 - 36851254
Alignment:
Q  330 gtgtgggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgcca 392  Q
    ||||| |||||| ||| |||||| ||||| ||| ||| |||||||||||||||||||||||||    
T  36851316 gtgtgtgaggactacatggacacatgtcacaatcatgcgtgggtgtacaagtggtacatgcca 36851254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 397
Target Start/End: Complemental strand, 51579399 - 51579342
Alignment:
Q  340 accacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||| |||||| ||||| |||| | |||||||||||||||||||||||||| ||||    
T  51579399 accacatggacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaa 51579342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 40947103 - 40947175
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagac 310  Q
    |||||||||||| ||| |||| ||||||| |||| | | ||||||||| |  |||||||||||||||||||||    
T  40947103 aggataatgttttatggacactctttttttcatataaatattgtaccatttcatatgagagtgtgtgagagac 40947175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 48525508 - 48525436
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccac-tctatatgagagtgtgtgagagac 310  Q
    ||||||||||||||| |||| ||||  || |||||||||||||||||| || || ||||||||| ||||||||    
T  48525508 ggataatgtttcatgaacaccctttcctctatacacacattgtaccacttccatgtgagagtgtttgagagac 48525436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 25784025 - 25784068
Alignment:
Q  354 tgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    ||||| |||||||||||| |||||||||||||||||||| ||||    
T  25784025 tgtcacaattatgtgtggatgtacaagtggtacatgccacctaa 25784068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 25783908 - 25783974
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtg 304  Q
    |||||||||||||||| |||   ||||||| |||||||| ||||||||  |||| ||||||||||||    
T  25783908 aggataatgtttcatgaacatctttttttctatacacacgttgtaccatcctatgtgagagtgtgtg 25783974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 238 - 397
Target Start/End: Complemental strand, 9046015 - 9045855
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtg-gg 336  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||  ||||||| ||       ||||| ||    
T  9046015 aggataatgtttcatgtacacactttttttcatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtaagtttttgtgtgtgtgg 9045916  T
Q  337 aggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  9045915 aggaccacaagaacacttgtcaaaattgtgtgtgggtgtacaagtgatacatgccacctaa 9045855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 239 - 397
Target Start/End: Original strand, 34792651 - 34792811
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtg-gga 337  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||  ||||||||||       |||||  ||    
T  34792651 ggataatgtttcatgtacacacttttttgcatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttgtgtgtgtaga 34792750  T
Q  338 g-gaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  34792751 gagaccacaaggacacttgtcaaaattatatgtgggtgtacaagtggtacatgccacctaa 34792811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 237 - 397
Target Start/End: Original strand, 14313985 - 14314146
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtga--gnnnnnnngtgtg 334  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||  |||||||||          |||||    
T  14313985 aaggataatgtttcatgtacacactttt-tccatacacacattgtaccactttatgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtg 14314083  T
Q  335 ggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    || | |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  14314084 ggggaaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 14314146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 237 - 392
Target Start/End: Original strand, 1244554 - 1244711
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgag--nnnnnnngtgtg 334  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||  ||||||||||||  |||||||  ||||||||||         |||||    
T  1244554 aaggataatgtttcatgtacacattttttttcatacacacattgtactacttcatatgagagtgttcgagagacaatacatgtgagtttttttgtgtgtg 1244653  T
Q  335 ggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgcca 392  Q
    || |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  1244654 gggggaccacaaggacacttgccaaaattgtgtgtggatgtacaagtggtacatgcca 1244711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 9521810 - 9521858
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtacca 285  Q
    |||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  9521810 aaggataatgtttcatgtacatccttttctccatacacacattgtacca 9521858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 23916053 - 23915994
Alignment:
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||||| |||||| ||||| |||| ||| |||||||| ||||||||||||||||||||    
T  23916053 ggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccatctaa 23915994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 16718179 - 16718131
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccact 287  Q
    ||||||||||||||| |||| ||||| || |||||||||||||||||||    
T  16718179 ggataatgtttcatgaacacccttttctctatacacacattgtaccact 16718131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 310
Target Start/End: Complemental strand, 12748397 - 12748322
Alignment:
Q  236 taaggataatgtttcatgtacacacttttttccatacacacattgtaccac-tctatatgagagtgtgtgagagac 310  Q
    |||||||||||||||||  |||| ||||| |  |||||||||||||||||| || || ||||||||| ||||||||    
T  12748397 taaggataatgtttcataaacacccttttctttatacacacattgtaccacttccatgtgagagtgtttgagagac 12748322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 23916148 - 23916077
Alignment:
Q  235 ataaggataatgtttcatgtacacacttttttccatacacacattgtaccact-ctatatgagagtgtgtga 305  Q
    ||||||||||||||||||| |||| ||||| | |||||||||  ||||||||| | || |||||||||||||    
T  23916148 ataaggataatgtttcatgaacacccttttctgcatacacactatgtaccactcccatgtgagagtgtgtga 23916077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 397
Target Start/End: Complemental strand, 29429656 - 29429606
Alignment:
Q  347 ggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||| ||||| |||| | |||||||||||||||||||||||||| ||||    
T  29429656 ggacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaa 29429606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 397
Target Start/End: Complemental strand, 12748290 - 12748233
Alignment:
Q  340 accacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||| |||||  ||||| |||||| ||||||||||||||||||| |||||| ||||    
T  12748290 accacatggacagatgtcacaattatatgtgggtgtacaagtggtatatgccacctaa 12748233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 32720546 - 32720469
Alignment:
Q  234 aataaggataatgtttcatgtacacacttttttccatacacacattgtaccact-ctatatgagagtgtgtgagagac 310  Q
    |||| |||||||| || ||| ||||  ||||||||||||||||||| ||||||| |||| ||| ||| ||||||||||    
T  32720546 aatatggataatgctttatggacacctttttttccatacacacattataccactcctatttgaaagtatgtgagagac 32720469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 397
Target Start/End: Original strand, 9521945 - 9521977
Alignment:
Q  365 tgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||||||||||||||||||||||||| ||||    
T  9521945 tgtgtgggtgtacaagtggtacatgccacctaa 9521977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 237 - 397
Target Start/End: Original strand, 46576240 - 46576402
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtga--gnnnnnnngtgtg 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||  |||||||||          |||||    
T  46576240 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtg 46576339  T
Q  335 ggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    || | ||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  46576340 ggggaaccacaaggacacttgttaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 46576402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 231 - 397
Target Start/End: Original strand, 30922702 - 30922870
Alignment:
Q  231 taaaataaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgag--nnnnnn 328  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||  ||||||||||            
T  30922702 taaaataaggataatgtttcatgtacatacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttg 30922801  T
Q  329 ngtgtgggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     ||||||| |||| ||||||||||||||||||||||||||||  |||||| ||||||||| ||| ||||    
T  30922802 tgtgtggggggactacaaggacacttgtcaaaattatgtgtgaatgtacatgtggtacataccacctaa 30922870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 238 - 389
Target Start/End: Complemental strand, 33496682 - 33496529
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgag--nnnnnnngtgtgg 335  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||  ||||| ||||         ||||||    
T  33496682 aggataatgtttcatgtacacacttttttccatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagtttttttgtgtgtgg 33496583  T
Q  336 gaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatg 389  Q
    | ||| ||||| |||||||||||||||||| |||||||||||||||||||||||    
T  33496582 ggggatcacaaagacacttgtcaaaattatatgtgggtgtacaagtggtacatg 33496529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 240 - 309
Target Start/End: Complemental strand, 52118 - 52049
Alignment:
Q  240 gataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagaga 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||    
T  52118 gataatgtttcatgtacacacttttttccatacacacattgtaccactacatatgagagtgtgagagaga 52049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 239 - 397
Target Start/End: Original strand, 38754897 - 38755055
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtgggag 338  Q
    ||||||| ||||||||||||  ||||||||||||| ||||| |||||| | || ||||||||||||||||||  || |||||||       ||||| | |    
T  38754897 ggataatatttcatgtacacctttttttccatacatacattataccaccccatgtgagagtgtgtgagagacaataaatgtgagtttttttgtgtgtggg 38754996  T
Q  339 gaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    || |||| |||||| ||||| |||||||| ||||||| |||||||||||||||| ||||    
T  38754997 gatcacatggacacatgtcataattatgtatgggtgttcaagtggtacatgccacctaa 38755055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 397
Target Start/End: Complemental strand, 48460830 - 48460681
Alignment:
Q  243 aatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtgggaggacc 342  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||  |||    |||       ||||||| ||| |    
T  48460830 aatgttttatgtacacacttttttccacacacacattgtaccactccatgtgagagtgtgtgagagacaatac----gagttttattgtgtggg-ggatc 48460736  T
Q  343 acaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    | ||||||||||||||||||| | ||||| ||||||| |||||||||||| ||||    
T  48460735 ataaggacacttgtcaaaattgtatgtggatgtacaaatggtacatgccacctaa 48460681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 38349455 - 38349531
Alignment:
Q  235 ataaggataatgtttcatgtacacacttttttccatacacacattgtaccac-tctatatgagagtgtgtgagagac 310  Q
    ||||||||||||||||||| |||| ||||  || |||||||||||||||||| || || ||||||||| ||||||||    
T  38349455 ataaggataatgtttcatgaacaccctttcctctatacacacattgtaccacttccatgtgagagtgtttgagagac 38349531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 28713860 - 28713787
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactct-atatgagagtgtgtgagagac 310  Q
    |||||||||||||||| |||| ||||| || ||||||| ||||||||||| | || ||||||||| ||||||||    
T  28713860 aggataatgtttcatgaacacccttttctctatacacatattgtaccactttcatgtgagagtgtttgagagac 28713787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 11752781 - 11752707
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccac---tctatatgagagtgtgtgagagac 310  Q
    ||||||| ||||||| |||   ||||||||||||||||||||||||||    |||| ||||||||||||||||||    
T  11752781 ggataatatttcatggacatctttttttccatacacacattgtaccacgctactatgtgagagtgtgtgagagac 11752707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 13768554 - 13768479
Alignment:
Q  237 aaggataatgttt-catgtacacacttttttccatacacacattgtaccact-ctatatgagagtgtgtgagagac 310  Q
    ||||||||||||| |||| |||| |||||||| ||||||| |||||| |||| | |||||||||||| ||||||||    
T  13768554 aaggataatgttttcatgaacacccttttttctatacacatattgtatcacttccatatgagagtgtttgagagac 13768479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 397
Target Start/End: Complemental strand, 28713754 - 28713699
Alignment:
Q  342 cacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||| |||||| ||||| |||||| ||||||||||||||||||| |||||| ||||    
T  28713754 cacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaa 28713699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 397
Target Start/End: Original strand, 38349560 - 38349619
Alignment:
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    ||| |||| |||||| ||||| |||||| ||||||||||||||||||| |||||| ||||    
T  38349560 ggaacacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaa 38349619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 43359157 - 43359083
Alignment:
Q  236 taaggataatgtttcatgtacacacttttttccatacacacattgtaccactct-atatgagagtgtgtgagaga 309  Q
    |||||||||||||||||  ||||  |||| |||||||||||| |||| ||| || || |||||||||||||||||    
T  43359157 taaggataatgtttcattgacaccattttctccatacacacaatgtatcaccctcatgtgagagtgtgtgagaga 43359083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 43659296 - 43659258
Alignment:
Q  241 ataatgtttcatgtacacacttttttccatacacacatt 279  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  43659296 ataatgtttcatgaacacccttttttccatacacacatt 43659258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 47480012 - 47480086
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtacca-ctctatatgagagtgtgtgagagac 310  Q
    ||||| ||| ||| ||||| ||||||| ||||||||||||||||||||| | | || ||||||||||| ||||||    
T  47480012 aaggacaatctttaatgtatacactttcttccatacacacattgtaccacccccatgtgagagtgtgtaagagac 47480086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 31741217 - 31741148
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccact-ctatatgagagtgtgtga 305  Q
    ||||||||||||||||| |||  |||||||| ||||||||  ||||||||| | || |||||||||||||    
T  31741217 aaggataatgtttcatgaacatccttttttctatacacactatgtaccactcccatgtgagagtgtgtga 31741148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 37536317 - 37536386
Alignment:
Q  241 ataatgtttcatgtacacacttttttccatacacacattgtaccactct-atatgagagtgtgtgagaga 309  Q
    ||||||||||||| ||||  |||| || ||||||||||||||||||| | || ||||||||| |||||||    
T  37536317 ataatgtttcatgaacaccattttctctatacacacattgtaccactttcatgtgagagtgtttgagaga 37536386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 42974395 - 42974439
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtac 283  Q
    ||||||||||||||| ||||  || ||||||||||||||||||||    
T  42974395 ggataatgtttcatgaacacctttgtttccatacacacattgtac 42974439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 239 - 397
Target Start/End: Complemental strand, 38247979 - 38247820
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtga--gnnnnnnngtgtggg 336  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||  |||||||||          |||||||    
T  38247979 ggataatgtttcatgtacacacttttt-ccatacacacattgtaccactctatgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtggg 38247881  T
Q  337 aggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     | |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  38247880 ggaaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 38247820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 237 - 397
Target Start/End: Complemental strand, 9271296 - 9271132
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtg-- 334  Q
    |||||||||||||||||||||||||||||| |||||| | |||||||||||  || | |||||||||||| |||  ||||||||||       |||||      
T  9271296 aaggataatgtttcatgtacacactttttttcatacatatattgtaccacttcatgtaagagtgtgtgagggacaatacatgtgagtttttttgtgtgtg 9271197  T
Q  335 -ggagg-accacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9271196 tggagggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 9271132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 241 - 397
Target Start/End: Original strand, 12224006 - 12224163
Alignment:
Q  241 ataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtggga--g 338  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||  |  ||||||||||||||||||  ||||||||||       ||||| ||  |    
T  12224006 ataatgtttcatgtacacacttttttccatacacac-ttgtaccacttcaggtgagagtgtgtgagagacaatacatgtgagttttcttgtgtgtgaggg 12224104  T
Q  339 gaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  12224105 gaccacaaggacacttgtcaaaattgtgtgtgggtgtacaaatggtacatgccacctaa 12224163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 239 - 389
Target Start/End: Original strand, 48034808 - 48034961
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgt---gg 335  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||  ||||| ||||       ||||   ||    
T  48034808 ggataatgttttatgtacacacttttttccatacacacattgtaccacttcatgtgagagtgtgtgagagacaatacatttgagtttttttgtgtgtggg 48034907  T
Q  336 gaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatg 389  Q
    | |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  48034908 ggggaccacaaggacacttgtcaaaattgtatgtgggtgtacaagtggtacatg 48034961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 239 - 397
Target Start/End: Complemental strand, 50989385 - 50989225
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtg--gg 336  Q
    ||||||||||||||||||||| ||||||  ||||||||||| |||||||  || ||||||||||||||||||  ||||||||||       | ||   ||    
T  50989385 ggataatgtttcatgtacacatttttttttatacacacattataccacttcatgtgagagtgtgtgagagacaatacatgtgagtttttttgcgtttagg 50989286  T
Q  337 aggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  50989285 gggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 50989225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 239 - 397
Target Start/End: Complemental strand, 51092517 - 51092357
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtg--gg 336  Q
    ||||||||||||||||||||| ||||||  ||||||||||| |||||||  || ||||||||||||||||||  ||||||||||       | ||   ||    
T  51092517 ggataatgtttcatgtacacatttttttttatacacacattataccacttcatgtgagagtgtgtgagagacaatacatgtgagtttttttgcgtttagg 51092418  T
Q  337 aggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  51092417 gggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaa 51092357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 397
Target Start/End: Complemental strand, 8496896 - 8496728
Alignment:
Q  232 aaaataaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgag----nnnnn 327  Q
    |||| ||| ||||||||||||| |||||||||||| |||||||||||| |||||||| || ||||||| ||||||||||  ||||| ||||             
T  8496896 aaaagaagaataatgtttcatgcacacactttttttcatacacacattctaccactccatgtgagagtatgtgagagacaatacatatgagtattttttt 8496797  T
Q  328 nngtgtgggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
      ||||||| ||||||||| |||||||||||||||| | |||||||| ||||||||||||||||| ||||    
T  8496796 gcgtgtggg-ggaccacaaagacacttgtcaaaattgtatgtgggtggacaagtggtacatgccacctaa 8496728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 309
Target Start/End: Complemental strand, 46135708 - 46135636
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtacca-ctctatatgagagtgtgtgagaga 309  Q
    |||||||||||||||| |||   |||| |||||||||||||||||||| | |||| |||||||||||||||||    
T  46135708 aggataatgtttcatgaacatcattttctccatacacacattgtaccacccctatgtgagagtgtgtgagaga 46135636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 397
Target Start/End: Complemental strand, 23004938 - 23004778
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccact-ctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtggg 336  Q
    |||||||||||||||| |||| ||||| |||||||||||  || |||||| | || ||||||||||||| ||    |  |||||||       ||||| |    
T  23004938 aggataatgtttcatgaacacccttttctccatacacactatgcaccacttccatgtgagagtgtgtgaaagtgtgtgaatgtgagtttttatgtgtgtg 23004839  T
Q  337 aggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     |||||||| | | || ||||| |||| |||||||||||||||||||||||||||| ||||    
T  23004838 gggaccacatgaatacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaa 23004778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 397
Target Start/End: Complemental strand, 54713708 - 54713546
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnng--tgtg 334  Q
    ||||||||| |||||||||||| |||||||||| ||| ||||| ||  || | || ||||||||||||||||||  || || ||||       |  ||||    
T  54713708 aaggataatatttcatgtacacccttttttccacacatacattatataaccccatgtgagagtgtgtgagagacaataaatatgagttcttttgtatgtg 54713609  T
Q  335 ggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     | |||  ||| |||||| ||||| |||||||||||| ||| |||||||||||||||| ||||    
T  54713608 tggggattacatggacacatgtcataattatgtgtggatgttcaagtggtacatgccacctaa 54713546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 36674519 - 36674591
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccac-tctatatgagagtgtgtgagagac 310  Q
    |||| |||||||||| |||  ||||| || |||||||||||||||||| || |||||||||||| ||||||||    
T  36674519 ggattatgtttcatgaacatccttttctctatacacacattgtaccacttccatatgagagtgtttgagagac 36674591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 397
Target Start/End: Complemental strand, 33288221 - 33288154
Alignment:
Q  330 gtgtgggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    ||||| ||||||||||  ||||| | ||| |||| |||||||||||||||||||||||| ||| ||||    
T  33288221 gtgtgtgaggaccacatagacacatatcacaattgtgtgtgggtgtacaagtggtacataccacctaa 33288154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 40726029 - 40725959
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccact-ctatatgagagtgtgtgagag 308  Q
    ||||||||||||||| ||||| |||||| |||||||||  |||| |||| |||| ||||| ||||||||||    
T  40726029 ggataatgtttcatggacacattttttttcatacacactatgtatcactcctatgtgagaatgtgtgagag 40725959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 237 - 397
Target Start/End: Original strand, 43065903 - 43066064
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtg-g 335  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||||||||| || || ||||||||||||||||||  ||||||||||       ||||| |    
T  43065903 aaggataatgttttatgtacacatttttttccatacatacattgtaccattccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtg 43066002  T
Q  336 gaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    | |||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||    
T  43066003 ggggaccacaaggacacttgtcaaaattgtgtgtggatgtacaagtggtacatgccacctaa 43066064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 238 - 397
Target Start/End: Original strand, 14342186 - 14342349
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtga---gnnnnnnngtgtg 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||  |||||||||           || ||    
T  14342186 aggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgaattttttttgtgtatg 14342285  T
Q  335 ggaggaccacaaggacacttgtc-aaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    || |||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| ||||    
T  14342286 gggggaccacaaggacacttgtcaaaaattgtgtgtgggtgtataagtggtacatgccacctaa 14342349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 238 - 397
Target Start/End: Original strand, 1993638 - 1993800
Alignment:
Q  238 aggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgag---nnnnnnngtgtg 334  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||| |  || ||||||||| ||||||||  ||||||||||          |||||    
T  1993638 aggataatgtttcgtgtacacactttttttcatacacacattgtaccatttcatgtgagagtgtatgagagacaatacatgtgagttttttttatgtgtg 1993737  T
Q  335 ggaggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    ||  ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  1993738 gggagaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtgatacatgccacctaa 1993800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 237 - 322
Target Start/End: Original strand, 4076767 - 4076852
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgag 322  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||  ||||||||||    
T  4076767 aaggataatgtttcatgtacacacttttttccatacacatattgtaccactctatgtgagagtgtgtgagagacaatacatgtgag 4076852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 11905035 - 11904963
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccac-tctatatgagagtgtgtgagagac 310  Q
    ||||||||||||||| |||| ||||| || |||||||||||||||||| || || ||||||||| ||||||||    
T  11905035 ggataatgtttcatgaacacccttttctctatacacacattgtaccacttccatgtgagagtgtttgagagac 11904963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 397
Target Start/End: Original strand, 4077062 - 4077121
Alignment:
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||||||| |||||| ||||| || ||||||||| |||||||||||||||||| ||||    
T  4077062 ggaccacaagaacacttatcaaagttgtgtgtgggtatacaagtggtacatgccacctaa 4077121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 397
Target Start/End: Original strand, 8368472 - 8368531
Alignment:
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||||  |||||| ||||| |||| |||||||||||||||||||||||||||| ||||    
T  8368472 ggaccacgtggacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaa 8368531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 11904934 - 11904875
Alignment:
Q  338 ggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
    |||||||| |||||| ||||| |||||| ||||||||||||||||||| |||||| ||||    
T  11904934 ggaccacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaa 11904875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 28898167 - 28898100
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactct-atatgagagtgtgtga 305  Q
    ||||||||||||||| ||||  |||| |||||||||||  ||||||||||| ||||||||||||||||    
T  28898167 ggataatgtttcatgaacaccattttctccatacacactatgtaccactctcatatgagagtgtgtga 28898100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 31774917 - 31774837
Alignment:
Q  230 ttaaaataaggataatgtttcatgtacacacttttttc-catacacacattgtaccactct-atatgagagtgtgtgagagac 310  Q
    |||||||||||||||||||||  ||| ||||| ||||| |||||||||||||||||||| | || ||||||||||||| ||||    
T  31774917 ttaaaataaggataatgtttc--gtagacactattttctcatacacacattgtaccactatcatgtgagagtgtgtgaaagac 31774837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 310
Target Start/End: Complemental strand, 35200741 - 35200666
Alignment:
Q  236 taaggataatgtttcatgtacacacttttttccatacacacattgtaccac-tctatatgagagtgtgtgagagac 310  Q
    |||||||||||||| ||| |||| ||||| || |||||||||||||||||| || || ||||||||| ||||||||    
T  35200741 taaggataatgtttgatgaacacccttttctctatacacacattgtaccacttccatgtgagagtgtttgagagac 35200666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 372
Target Start/End: Original strand, 5749029 - 5749162
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtgggag 338  Q
    ||||||| |||||||||||   |||||| |||||| ||||| |||||| | || ||||||||||||||||||  || |||| ||       ||||| | |    
T  5749029 ggataatatttcatgtacatcttttttttcatacatacattataccaccccatgtgagagtgtgtgagagacaataaatgtaagtttttttgtgtgtggg 5749128  T
Q  339 gaccacaaggacacttgtcaaaattatgtgtggg 372  Q
    || |||| |||||| ||||| |||||||||||||    
T  5749129 gatcacatggacacatgtcataattatgtgtggg 5749162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 10592056 - 10592010
Alignment:
Q  339 gaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggta 385  Q
    ||||||| |||||| ||||| |||||| |||||||||||||||||||    
T  10592056 gaccacatggacacatgtcacaattatatgtgggtgtacaagtggta 10592010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 10592148 - 10592086
Alignment:
Q  249 tcatgtacacacttttttccatacacacattgtaccactct-atatgagagtgtgtgagagac 310  Q
    ||||| |||| |||||||  ||||||||||||||||||| | |||||||||||| ||||||||    
T  10592148 tcatgaacacccttttttttatacacacattgtaccactttcatatgagagtgtttgagagac 10592086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 16465610 - 16465679
Alignment:
Q  241 ataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagac 310  Q
    ||||||||||||| ||||  ||||||| ||||||||| |||||||| | || | ||| ||||||||||||    
T  16465610 ataatgtttcatggacacctttttttcaatacacacaatgtaccaccccatttcagaatgtgtgagagac 16465679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 237 - 397
Target Start/End: Original strand, 3054 - 3213
Alignment:
Q  237 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgagnnnnnnngtgtggg 336  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||  ||||| |||        ||||| |    
T  3054 aaggataatgtttcatatacacacttttttccatacacacattgtaccactccatgtgagagtgtatgagagacaatacatatgaatttttttgtgtgag 3153  T
Q  337 aggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaa 397  Q
     |||| ||||||||||||||||||||| | ||||||||||||| ||||||||| |||||||    
T  3154 -ggactacaaggacacttgtcaaaattgtatgtgggtgtacaaatggtacatgtcatctaa 3213  T

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Target: scaffold0533 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 239 - 389
Target Start/End: Original strand, 10232 - 10383
Alignment:
Q  239 ggataatgtttcatgtacacacttttttccatacacacattgtaccactctatatgagagtgtgtgagagaccctacatgtgag--nnnnnnngtgtggg 336  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||| || ||||||| ||||||||||  ||||||||||         ||||| |    
T  10232 ggataatgtttcatgtacgcactttt-tccatacacacattgtaccactccatgtgagagtatgtgagagacaatacatgtgagtttttttgtgtgtgag 10330  T
Q  337 aggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatg 389  Q
    ||||||||||||||||||||||||||||| ||||  | ||||||| |||||||    
T  10331 aggaccacaaggacacttgtcaaaattatatgtgaatatacaagtagtacatg 10383  T

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