View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3249_high_7 (Length: 459)
Name: NF3249_high_7
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Original strand, 43339382 - 43339813
Alignment:
| Q |
18 |
gaaaatatctctttttgaaagattggtggatcagagaacaaccattctgtgtgtgattccctcatttattcagtgcggtttctaacagagatgttaaggt |
117 |
Q |
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| T |
43339382 |
gaaaatatctctttttgaaagattggtggatcagagaacaaccattctgtgtgtgattccctcatttattcagtgcggtttctaacagagatgttaaggt |
43339481 |
T |
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| Q |
118 |
gtccgacatgggatgttggtgagataatatgtggatttggagatggaattggtccaaaaatttgcaaccggaccatctgttttgcagtaggaaattctgc |
217 |
Q |
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| T |
43339482 |
gtccgacatgggatgttggtgagataatatgtggatttggagatggaattggtccaaaaatttgcaaccggaccatctgttttgcagtaggaaattctgc |
43339581 |
T |
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| Q |
218 |
aggtgcagccgcgaccatctgtttctgataccttctgctggctgcccgacgaaggagcagggttcttggtgnnnnnnnnttctatttggtgctgtcaaat |
317 |
Q |
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| T |
43339582 |
aggtgcagccgcgaccatctgtttctgataccttctgctggctgcccgacgaaggagcagggttcttggtgaaaaaaaattctatttggtgctgtcaaat |
43339681 |
T |
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| Q |
318 |
ttgttccgtgatgctgaatatgatgaagattattgtggcagcagcttcgcagatttggagcaggctgccagctagagtggaattgcggagaagggaagta |
417 |
Q |
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| T |
43339682 |
ttgttccgtgatgctgaatatgatgaagattattgtggcagcagcttcgcagatttggagcaggctgccaactagagtggaattgcggagaagggaagta |
43339781 |
T |
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| Q |
418 |
ataagagatgttcaccgacaatgttgtctgtg |
449 |
Q |
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| T |
43339782 |
ataagagatgttcaccgacaatgttgtgtgtg |
43339813 |
T |
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