View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3249_low_1 (Length: 866)
Name: NF3249_low_1
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 254 - 590
Target Start/End: Complemental strand, 42934509 - 42934157
Alignment:
| Q |
254 |
aattaaatgtaaacttaagaagtagtactatcatggaattaatgcattttatgtcattcaatactctctttttcgtccaaggtgtgagatggatctgcta |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42934509 |
aattaaatgtaaacttaagaagtagtactatcatggaattaatgcattttatgtcattcaatactctctttttcgtccaaggtgtgagatggatctgcta |
42934410 |
T |
|
| Q |
354 |
attagttccaccataaaaactttcta----------------cttctattagtggatttcattcagcacatgttatatccaaacatacataatcaagtac |
437 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42934409 |
attagttccaccataaaaactttctagttctaaaaggtataacttctattagttgatttcattcagcacatgttatatccaaacatacataatcaagtac |
42934310 |
T |
|
| Q |
438 |
taaaaccataacatcataatcatacatgaaatgccccaaattataatgtgttctaactcctgtaagccaaaaaatctcatgaaacctagattaaaatgaa |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42934309 |
taaaaccataacatcataatcatacatgaaatgccccaaattataatgtgttctaactcctgtaagccaaaaaatctcatgaaacctagattaaaatgaa |
42934210 |
T |
|
| Q |
538 |
gcaagcaatgatttgtaacaaacaaacaaatcaacaacaaacttggcttcata |
590 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42934209 |
gcaagaaatgatttgtaacaaacaaacaaatcaacaacaaacttggcttcata |
42934157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 42934786 - 42934524
Alignment:
| Q |
7 |
catcatcaccatcaccatcactgcatattcagtagaatatcatatcagaaaatgttaaaattaatggtaaaaaatctatcttaggatatttgcattttta |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42934786 |
catcatcatcatcaccatcactgcatattcagcagaatatcatatcagaaaatgttaaaattaatggtaaaaaatctatcttaggatatttgcattttta |
42934687 |
T |
|
| Q |
107 |
attgaagggttggttaaatctgtgcttttgaggggatattagcagaggtacagaatcctaaaactagagttgtgattggttttatttgtggatatggaca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42934686 |
attgaagggttggttaaatctgtgcttttgaggggatattagcagaggtacagaatcctaaaactagagttgtgattggttttatttgtggatatggaca |
42934587 |
T |
|
| Q |
207 |
attagagtaattatgttagattcaattatttgcatgacataaaagacaattaaatgtaaactt |
269 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42934586 |
attagagtaattatgttagattccattatttgcatgacataaaagacaattaaatgtaaactt |
42934524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 588 - 851
Target Start/End: Complemental strand, 42934135 - 42933875
Alignment:
| Q |
588 |
ataattatatatagaatcaaagtggttaattcaaccaaagaaacacaaatttacaaaacgaaattgggaaaacataaaataaaatagatcaccaactaaa |
687 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42934135 |
ataattatatatagaatcaatgtgattaattcaaccaaagaaactcaaatttacaaaacgaaattgggaaaacataaaataaaatagatcaccaactaaa |
42934036 |
T |
|
| Q |
688 |
taacaaacctggtgccccggatcaatactacttctgctgttggtatccaaagaattcatttcattgattaggtcaaaaacgggtttctgatcatttcctt |
787 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42934035 |
taacaaacctggtgccccggatcaatactact---gctgttggtatccaaagaattcatttcattgattaggtcaaaaacgggtttctgatcatttcctt |
42933939 |
T |
|
| Q |
788 |
gatcatcaccaacacgttcctgatcttcttcaccgtcttcttcgttattgttaccctccaaagt |
851 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
42933938 |
gatcatcaccaacacgttcctgatcttcttcaccatcttcttccttattgttaccctccaaagt |
42933875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University