View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3249_low_10 (Length: 445)
Name: NF3249_low_10
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_low_10 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Complemental strand, 31334286 - 31333867
Alignment:
| Q |
20 |
tcatttaccatgatttcatcaagctcagggggaatccaaacacaagtagaaagaaaatcagcaatcttatggttcttgcccttttcgaagaaaatctaca |
119 |
Q |
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||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31334286 |
tcatttaccttgatttcatcaaactcagggg-aatccaaacacaagtagaaagaaaatcagcaatcttatggttcttgcctttttcgaagaaaatctaca |
31334188 |
T |
|
| Q |
120 |
atcctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaaccctt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31334187 |
atcctatttgaaatacaaaatgcagttgattgaatagtgatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaaccctt |
31334088 |
T |
|
| Q |
220 |
cagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattttgcaacttcccatttgatgagcagaagtatacaaattcca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |
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| T |
31334087 |
cagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaagtatacaaattcca |
31333988 |
T |
|
| Q |
320 |
attctcacctggcgacaatgctccttccattggataaacactatctataaactcttcaatttccttttcgccagtgttctcattacacttaattctctga |
419 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |
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| T |
31333987 |
attctcacctggccacaatgctccttccattggataaacactatctataaactcttcaatttccttctcactggtgttctcattacacttaattctctga |
31333888 |
T |
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| Q |
420 |
ccaccacttctctgtgctcct |
440 |
Q |
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||||||||||| |||| |||| |
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| T |
31333887 |
ccaccacttctgtgtgttcct |
31333867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 75 - 440
Target Start/End: Complemental strand, 31321979 - 31321614
Alignment:
| Q |
75 |
aatcagcaatcttatggttcttgcccttttcgaagaaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacac |
174 |
Q |
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||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31321979 |
aatcaacaatcttttgattcttgcccctttcgaagaaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtgatcataggattaacac |
31321880 |
T |
|
| Q |
175 |
caacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcc |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321879 |
caacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcc |
31321780 |
T |
|
| Q |
275 |
cattttgcaacttcccatttgatgagcagaagtatacaaattccaattctcacctggcgacaatgctccttccattggataaacactatctataaactct |
374 |
Q |
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|||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321779 |
cattctacaactccccatttgatgagcagaagtatacaaattccaattctcacctggccacaatgctccttccattggataaacactatctataaactct |
31321680 |
T |
|
| Q |
375 |
tcaatttccttttcgccagtgttctcattacacttaattctctgaccaccacttctctgtgctcct |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |
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| T |
31321679 |
tcaatttccttttcgccagtgttctcattacacttaattctctgaccatcacttctgtgtgttcct |
31321614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 147 - 305
Target Start/End: Complemental strand, 39110562 - 39110404
Alignment:
| Q |
147 |
gattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcat |
246 |
Q |
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|||||||| || | |||||| ||||||||||| ||| | || | |||||| ||||||| ||| ||||||||| ||||||||||| || ||||| |||| |
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| T |
39110562 |
gattgaatggttaccatagggttaacaccaactgcactaggcaaaacacttccatcacacacatacaacccttttgcttcccaactttctccattctcat |
39110463 |
T |
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| Q |
247 |
caacagcaccttccttttcattcactcccattttgcaacttcccatttgatgagcagaa |
305 |
Q |
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| T |
39110462 |
caactgcaccctcttcttcattcttacccattctacaacttcccatttgatgtgcagaa |
39110404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 10926351 - 10926283
Alignment:
| Q |
110 |
aaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaaca |
179 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||| || | ||||||||||| |||| |
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| T |
10926351 |
aaaatttacaatc-tatttgaaatacaaaatgcagttgattgaatagttattagaggattaacactaaca |
10926283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 320
Target Start/End: Original strand, 33521062 - 33521232
Alignment:
| Q |
150 |
tgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcatcaa |
249 |
Q |
| |
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|||||||| ||||| ||||| | ||| | |||||||||| | ||| |||||||| ||||| | ||||||||||||||| ||| ||||||||||||| |
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| T |
33521062 |
tgaatagttatcatgggattgatacctatggcagttggaaacaaacttgcatcacacacaaatagtccttcagcttcccaattctgtccattttcatcaa |
33521161 |
T |
|
| Q |
250 |
cagcaccttccttttcattcactcccattttgcaacttcccatttgatgagcagaagtatacaaattccaa |
320 |
Q |
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| T |
33521162 |
ccgtgccttccttatcagtgattcctatcctacaactccccatctggtgagcagatgcatacatattccaa |
33521232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 440
Target Start/End: Original strand, 2010 - 2057
Alignment:
| Q |
393 |
gtgttctcattacacttaattctctgaccaccacttctctgtgctcct |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
2010 |
gtgttctcattacacttaattctctgaccaccacttctgtgtgttcct |
2057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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