View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3249_low_12 (Length: 406)
Name: NF3249_low_12
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 390
Target Start/End: Complemental strand, 30793265 - 30792881
Alignment:
| Q |
16 |
ggttgtaacaaattcaaatgaaggtcgaacaagtaccacattttgcctagctccttcagctgattgtaccgtagagccagcacaagctatcattgatatc |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |
|
|
| T |
30793265 |
ggttgtgacaaattcaaatgaaggtcgaacaagtgctgcattttgcctagctccttcagctgattgtactgtatagccagcacaagctatcattgatgtc |
30793166 |
T |
|
| Q |
116 |
tatcaaatataaggatttttactcccactactttgacaactatggaaacacgaatgtgttgctaaaaacgtttgaggcaataattaaatgaaataatatt |
215 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30793165 |
tttcaaatataaggatttttactcccactactttaacaactatggaaacacgaatgtggtgctaaaaacgtttgagtcaataattaaatgaaataatatt |
30793066 |
T |
|
| Q |
216 |
ttggaattgaaggcaaaaagtgttgtattgatggtgtattgttggtacactttaaatcttatctttctaattataaatgtcaaaggattcaaggttgagt |
315 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30793065 |
ttgaaattgaaggcaaaaagtgttgtattgatgatgtattgttggtacactttaaatcttatctttctaattataaatgtcaaaggattcaaggttgagt |
30792966 |
T |
|
| Q |
316 |
tacatcaatgatgtgc----------acattttactatgtgcttgagttccttactatgcttttttcattttgatagtagatttt |
390 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30792965 |
tagatcaatgatgtgcacatatgtgcacattttactatgtgcttgagttccttactatgcttttttcattttgatagtagatttt |
30792881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 30808077 - 30808028
Alignment:
| Q |
63 |
tagctccttcagctgattgtaccgtagagccagcacaagctatcattgat |
112 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
30808077 |
tagctccttcagatgattgttacgtagagccagcacaagctatcactgat |
30808028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 30800064 - 30800008
Alignment:
| Q |
56 |
ttttgcctagctccttcagctgattgtaccgtagagccagcacaagctatcattgat |
112 |
Q |
| |
|
|||||| |||||||||||| |||||| || ||||||||||||||| || |||||||| |
|
|
| T |
30800064 |
ttttgcttagctccttcagatgattgcactgtagagccagcacaatctttcattgat |
30800008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University