View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3249_low_13 (Length: 402)
Name: NF3249_low_13
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 388
Target Start/End: Complemental strand, 10219958 - 10219582
Alignment:
| Q |
12 |
atgaacaagaaaagtaatgaatgataccatgtaatatttataagtagcagcagggtaattccgaatataaaagcgatgaacatcagtaggaggaaacaaa |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10219958 |
atgaacaagaaaagtaatgaatcataccatgtaatatttataagtagcagcagggtaattccgaatataaaagcgatgaacatcagtaggaggaaacaaa |
10219859 |
T |
|
| Q |
112 |
agaaagtgtttttgaccagtaacaacagcataaagattctcataatgatccttatgaaaccaagtagatgaatgtttgttcccaatccaaagattaacag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10219858 |
agaaagtgtttttgaccagtaacaacagcataaagattctcataatgatccttatgaaaccaagtagatgaatgtttgtttccaatccaaagattaacag |
10219759 |
T |
|
| Q |
212 |
cttcaggctctaaaccaaatgcttcagtagcccaagcaatatgttgatcacaatctttaacaatggaatcatactctgaacgaaaacaatcgttctgttc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10219758 |
cttcaggctctaaaccaaatgcttcagtagcccaagcaatatgttgatcacaatctttaacaatggaatcatactctgaacgaaaacaatcgttctgttg |
10219659 |
T |
|
| Q |
312 |
ctgcgcgtaggcgacacattgggaagggttagaggagttgatgagacggagggcttcggggaaagggaggttttgga |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10219658 |
ctgcgcgtaggcgacacattgggaagggttagaggagttgatgagacggagggcttcggggaaagggaggttttgga |
10219582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University