View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3249_low_14 (Length: 389)
Name: NF3249_low_14
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 210 - 372
Target Start/End: Complemental strand, 46875576 - 46875414
Alignment:
| Q |
210 |
tctctccacacttaaaattcaaattttcacacaaaccatcgtcgaaactaaatgtcatcgtacaaattaactgagttaggaagggtgacaaggggtagcc |
309 |
Q |
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| T |
46875576 |
tctctccacacttaaaattcaaattttcacacaaaccatcgtcgaaactaaatgtcatcgtacaaattaactgagtgaggaagggtgacaaggggtagcc |
46875477 |
T |
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| Q |
310 |
gtgaatggcgtagagggtttccgacgaaagcattatacttcaagtttatggacatgaactttg |
372 |
Q |
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| T |
46875476 |
gtgaatggcgtagagggtttccgacgaaagcattatacttcaagtttatggacatgaactttg |
46875414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 46875779 - 46875643
Alignment:
| Q |
8 |
cgaagaatataatcaccaaacaaatttcaacgcaatttagacaaagattatttcaattcattgaatatttgattcaaaacaagtttaatcaaactctcag |
107 |
Q |
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| T |
46875779 |
cgaagaaaataatcaccaaacaaatttcaacgcaatttagacaaagattatttcaattcattgaatatttgattcaaaacaagtttaatcaaactctcag |
46875680 |
T |
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| Q |
108 |
taaattaattaaatcattagagaatcaataagaacct |
144 |
Q |
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| T |
46875679 |
taaattaattaaatcattagagaatcaataagaacct |
46875643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 46877420 - 46877361
Alignment:
| Q |
71 |
aatatttgattcaaaacaagtttaatcaaactctcagtaaattaattaaatcattagaga |
130 |
Q |
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| T |
46877420 |
aatatttgattcaaatcaagtttaatcaaactctcagtatattaattaaatcaatagaga |
46877361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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