View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3249_low_15 (Length: 369)
Name: NF3249_low_15
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 36288742 - 36289093
Alignment:
| Q |
1 |
aagtggttattgggatggtagagttttcacaggtgtaccaaatatgacaggaagttatctttttggttttaggcttaatacaaatgataatggagaaagg |
100 |
Q |
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| T |
36288742 |
aagtggttattgggatggtagagttttcacaggtgtaccaaatatgacaggaagttatctttttggttttaggcttaatacaaatgatactggagaaagg |
36288841 |
T |
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| Q |
101 |
tattttgtatatgaagcattggaaaatagtgataaggtaaggttccagcttggatatgatggatatgagagacaattcaggtggaatgaagaagagaaag |
200 |
Q |
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| T |
36288842 |
tattttgtatatgaagcattggaaaatagtgataaggtaaggttccaacttggatatgatggatatgagagacaattcaggtggaatgaagaagagaaag |
36288941 |
T |
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| Q |
201 |
aatggaatgtgatactaagtgagcctaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaa |
300 |
Q |
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| T |
36288942 |
aatggaatgtgatactaagtgagcctaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaa |
36289041 |
T |
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| Q |
301 |
atgcataaaagggtttgaaccaagggatgtgaaaagttggaatagtgggaat |
352 |
Q |
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| T |
36289042 |
atgcataaaagggtttgaaccaagggatgtgaaaagttggaatagtgggaat |
36289093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 103 - 352
Target Start/End: Complemental strand, 12096773 - 12096524
Alignment:
| Q |
103 |
ttttgtatatgaagcattggaaaatagtgataaggtaaggttccagcttggatatgatggatatgagagacaattcaggtggaatgaagaagagaaagaa |
202 |
Q |
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|||| |||||||||||||||||||||| |||||| || |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12096773 |
ttttttatatgaagcattggaaaatagggataagatacggtttcagcttgggtatgatggatatgagagacaattcaggtggaatgaagaagagaaagaa |
12096674 |
T |
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| Q |
203 |
tggaatgtgatactaagtgagcctaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaat |
302 |
Q |
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|| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12096673 |
tgcaatgtgttacaaagtgagcttaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaat |
12096574 |
T |
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| Q |
303 |
gcataaaagggtttgaaccaagggatgtgaaaagttggaatagtgggaat |
352 |
Q |
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|||||||||||||||| |||| |||||||||||||||| ||||||||||| |
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| T |
12096573 |
gcataaaagggtttgagccaaaggatgtgaaaagttgggatagtgggaat |
12096524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 12096832 - 12096769
Alignment:
| Q |
1 |
aagtggttattgggatggtagagttttcacaggtgtaccaaatatgacaggaagttatcttttt |
64 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
12096832 |
aagtggttattgggatggtagagttttcacaggtgtgccaaatatgacaggaagatatcttttt |
12096769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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