View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3249_low_16 (Length: 328)
Name: NF3249_low_16
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 27227868 - 27227570
Alignment:
| Q |
13 |
acatcatcatcgcacataacacgtaaatcatcacacattctggggagattaactcggaacctcttcccaaatccacaatccccattgaacttcttcctaa |
112 |
Q |
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| T |
27227868 |
acatcatcatcgcacataacatgtaaatcatcacacattctggggagattaactcggaacatcttcccaaatccacaatccccattgaatttcttcctaa |
27227769 |
T |
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| Q |
113 |
tgactaacaagcttctaacactaactgatttgggagcaacactaataaagtgttataaaataagcttaacaaaaccaaatactcattataatatagttca |
212 |
Q |
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| T |
27227768 |
tgactaacaagcttctaacactaactgatttgggagcaacactaataaagtgttataaaataagcttaacaaaaccaaatactcattataatatagttca |
27227669 |
T |
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| Q |
213 |
tgatttccaaaccgtaaccaaaaaatccaaatacacagtcggtcctgtttggataaatcactttagtaagcgcttttgaaacaagtgtttatgtaatata |
312 |
Q |
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| T |
27227668 |
tga-ttccaaaccgtaaccaaaaaatccaaatacacagttggtcctgtttggataaatcactttagtaagcgcttttgaaacaagtgtttatgtaatata |
27227570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 5076231 - 5076141
Alignment:
| Q |
123 |
gcttctaacactaactgatttgggagcaacactaataaagtgttataaaataagcttaacaaaaccaaatactcattataatatagttcat |
213 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||| ||||||||||||| ||| ||||||| |
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| T |
5076231 |
gcttctaacactaactgattcgggagcaacactaataaaacattataaaacaagcctaacaaaactaaatactcattattatacagttcat |
5076141 |
T |
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