View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3249_low_19 (Length: 279)
Name: NF3249_low_19
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3249_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 45645827 - 45645569
Alignment:
| Q |
16 |
actatttcaaaaacaaacttccataacagaggcaagttttcttgtttctgctaggactcgaaacaaaaagatcatttcctttcccacacaaaaaatatta |
115 |
Q |
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| T |
45645827 |
actatttcaaaaacaaacttccataacagaggcaagttttcttgtttctgctaggactcgaaacaaaaagatcatttcctttcccacacaaaaaatatta |
45645728 |
T |
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| Q |
116 |
cgagctctccaattccagcaaagcccgactaagaacaaacacatagaagggtcagtggagttagttcgaattcaatcctggagattctgatttgataaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45645727 |
cgagctctccaattccagcaaagcccgactaagaacaaacacatagaaaggtcagtggagttagttcgaattcaatcttggagattctgatttgataaga |
45645628 |
T |
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| Q |
216 |
agttgatgtccatgaatttaagaccatgcgatacttttttagaagttcagcaatctctg |
274 |
Q |
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| T |
45645627 |
agttgatgtccatgaatttaagaccatgcgatacttttttagaagttgagcaatctctg |
45645569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 31 - 273
Target Start/End: Complemental strand, 51918571 - 51918327
Alignment:
| Q |
31 |
aacttccataacagaggcaagttttcttgtttctgctaggactcgaaacaaaaagatcatttcctttcccacacaaaaaatattacgagctctccaattc |
130 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| ||||| || ||||||||||||| |
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| T |
51918571 |
aacttccataatagaggcaagttttcttgtttctgctagaacttgaaacaaaaagatcgtttcctttcccacacaaacaatataacaagctctccaattc |
51918472 |
T |
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| Q |
131 |
cagc-aaagcccgactaagaacaaacacatagaagggtcagtggagttagttcgaattcaatcctggagattctgatttga-taagaagttgatgtccat |
228 |
Q |
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| T |
51918471 |
caccaaaagttcgattaagaacaaacacatagaagggccgatagagttagttcgaatccaatcctgaagattcaaatttgagaaagaagttgatatccat |
51918372 |
T |
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| Q |
229 |
gaatttaagaccatgcgatacttttttagaagttcagcaatctct |
273 |
Q |
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|||| |||||||||| ||||||||||||||||| |||||||||| |
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| T |
51918371 |
gaatccaagaccatgccatacttttttagaagttgagcaatctct |
51918327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 1515406 - 1515622
Alignment:
| Q |
30 |
aaacttccataacagaggcaagttttcttgtttctgctaggactcgaaacaaaaagatcattt--cctttcccacacaaaaaatattacgagctctccaa |
127 |
Q |
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|||||||||||| ||||||||| || |||| ||| ||| |||| ||||||||||||| ||| ||||||||| ||| |||||||| | |||||||| |
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| T |
1515406 |
aaacttccataattgaggcaagtgttattgtctcttctaagacttgaaacaaaaagattttttttcctttcccatgtaaacaatattacaatctctccaa |
1515505 |
T |
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| Q |
128 |
ttccagcaaagcccgactaagaacaaacacatagaagggtcagtggagttagttcgaattcaatcctggagattctgatttgataagaagttgatgtcca |
227 |
Q |
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||||| |||||||| |||||||||||||| | |||||| || ||||| |||||||||| ||||||| |||||| |||||||||||| | ||||| |
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| T |
1515506 |
ttccaccaaagcccaactaagaacaaacatgttgaagggccaatggaggtagttcgaatccaatcctaaagattcaattttgataagaagccgttgtccg |
1515605 |
T |
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| Q |
228 |
tgaatttaagaccatgc |
244 |
Q |
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||||| |||||||||| |
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| T |
1515606 |
tgaatccaagaccatgc |
1515622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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