View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3249_low_2 (Length: 757)

Name: NF3249_low_2
Description: NF3249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3249_low_2
NF3249_low_2
[»] chr2 (6 HSPs)
chr2 (138-575)||(32498700-32499143)
chr2 (10-140)||(32499552-32499682)
chr2 (603-741)||(32498559-32498703)
chr2 (256-347)||(38821366-38821457)
chr2 (309-347)||(24766152-24766190)
chr2 (318-351)||(15678169-15678202)
[»] chr5 (1 HSPs)
chr5 (271-351)||(40829410-40829490)
[»] chr1 (2 HSPs)
chr1 (300-351)||(49020428-49020479)
chr1 (310-351)||(47059913-47059954)
[»] chr6 (2 HSPs)
chr6 (308-350)||(16743298-16743340)
chr6 (188-230)||(33210228-33210270)
[»] chr4 (1 HSPs)
chr4 (309-347)||(20632681-20632719)
[»] chr3 (2 HSPs)
chr3 (309-351)||(52100257-52100299)
chr3 (270-347)||(33976388-33976465)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-172; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 138 - 575
Target Start/End: Complemental strand, 32499143 - 32498700
Alignment:
Q  138 atattgttttgacatcaaaggtacatatatttgcatagatgatgtatatcttatttcaactatcattttt-aaaacaatttattagacaactaagtgcat 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  32499143 atattgttttgacatcaaaggtacatatatttgcatagatgatgtatatcttatttcaactatcattttttaaaacaatttattagacaactaaatgcat 32499044  T
Q  237 gtgaataaatata-----atc--aatgcaatacagagaagataaaaacacaatgagagtattataaaaagaattgtcttaaaagttattaaaaaatggtt 329  Q
    |||||||||||||     ||   || | ||| ||  | | ||| ||||| ||||||||||||||| |||||||||||||||||||||||| |||||| ||    
T  32499043 gtgaataaatataggtatattggaacgaaat-caatgca-atataaacataatgagagtattatagaaagaattgtcttaaaagttattagaaaatgatt 32498946  T
Q  330 gtatgaatatcatttctcatttacatatgtcatatgtattattgagtaatgatatttgaataatcaataatcaaaagttgataacttttgaaacaacctt 429  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  32498945 gtataaatatcatttctcatttgcatatgtcatatgtattattgagtaatgatatttgaataatcaataatcaaaagttgacaacttttggaacaacctt 32498846  T
Q  430 cttttttggaaccatctggaaactctgatacaaactctgggtttatcatcctgcctatgattttgtatcactctgatacaaactgaacccctatttgtat 529  Q
     ||||||||||||||  ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32498845 tttttttggaaccattcggaaactttgatacaaactctgggtttatcatcctacctatgattttgtatcactctgatacaaactgaacccctatttgtat 32498746  T
Q  530 ccttccaagtagtggcactttgtaaaattcaggagtagtcatacac 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32498745 ccttccaagtagtggcactttgtaaaattcaggagtagtcatacac 32498700  T

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Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 32499682 - 32499552
Alignment:
Q  10 aagaatatccaaagagaaaaggtactacatatgtaatattttataaatttcagcgcatcaaatctgattctctatacgcgatcattattataatcgtcat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||    
T  32499682 aagaatatccaaagagaaaaggtactacatatgtaatattttataaatttcagcacatcaaatctgattctctataggcgatcattattataatcgccat 32499583  T
Q  110 attgttttgacatcaaaagtgtatataaata 140  Q
    |||||||||||||||||||||||||||||||    
T  32499582 attgttttgacatcaaaagtgtatataaata 32499552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 603 - 741
Target Start/End: Complemental strand, 32498703 - 32498559
Alignment:
Q  603 acactgcacatcagaggtgtgagaagacaaagtagattgctaa------atcattttctgcaactcgtcatggttatgcaatcaggtaagtaataagatt 696  Q
    ||||||||||||| |||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32498703 acactgcacatcataggtgtgagaagacaaagtagattgctaagtcaggatcattttctgcaactcgtcatggttatgcaatcaggtaagtaataagatt 32498604  T
Q  697 atcatggttgcaaatcgggtaaatgacgaggtcatcatggctgtg 741  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||    
T  32498603 atcatggttgcaaatcgggtaaatgaagaggtcatcatggttgtg 32498559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 38821457 - 38821366
Alignment:
Q  256 gcaatacagagaagataaaaacacaatgagagtattataaaaagaattgtcttaaaagttattaaaaaatggttgtatgaatatcatttctc 347  Q
    |||||| ||||||| ||||||||||||| |||||| | ||| | |||||||  ||||||| | | |||||||||||   |||||||||||||    
T  38821457 gcaatagagagaaggtaaaaacacaatgtgagtatgagaaagaaaattgtcacaaaagttgtcataaaatggttgttcaaatatcatttctc 38821366  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 24766190 - 24766152
Alignment:
Q  309 aaaagttattaaaaaatggttgtatgaatatcatttctc 347  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  24766190 aaaagttattaaaaaatggttgtacaaatatcatttctc 24766152  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 351
Target Start/End: Complemental strand, 15678202 - 15678169
Alignment:
Q  318 taaaaaatggttgtatgaatatcatttctcattt 351  Q
    |||||||||||||||| |||||||||||||||||    
T  15678202 taaaaaatggttgtataaatatcatttctcattt 15678169  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 40829490 - 40829410
Alignment:
Q  271 taaaaacacaatgagagtattataaaaagaattgtcttaaaagttattaaaaaatggttgtatgaatatcatttctcattt 351  Q
    |||||| | |||| |||||| | | ||| |||||||  |||| |||||||||||||||||||  |||||||||||||||||    
T  40829490 taaaaatataatgtgagtatgagagaaaaaattgtcacaaaaattattaaaaaatggttgtacaaatatcatttctcattt 40829410  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 49020428 - 49020479
Alignment:
Q  300 aattgtcttaaaagttattaaaaaatggttgtatgaatatcatttctcattt 351  Q
    |||||||  ||||||| ||||||||||||||||  |||||||||||||||||    
T  49020428 aattgtcacaaaagttgttaaaaaatggttgtacaaatatcatttctcattt 49020479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 47059913 - 47059954
Alignment:
Q  310 aaagttattaaaaaatggttgtatgaatatcatttctcattt 351  Q
    |||||| ||||||||||||||||  |||||||||||||||||    
T  47059913 aaagttgttaaaaaatggttgtacaaatatcatttctcattt 47059954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 16743298 - 16743340
Alignment:
Q  308 taaaagttattaaaaaatggttgtatgaatatcatttctcatt 350  Q
    ||||| |||||||||||||||||||  ||||||||||||||||    
T  16743298 taaaaattattaaaaaatggttgtacaaatatcatttctcatt 16743340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 33210270 - 33210228
Alignment:
Q  188 ttatttcaactatcatttttaaaacaatttattagacaactaa 230  Q
    |||||||||| | ||||||||||||||||||| ||||||||||    
T  33210270 ttatttcaacaaccatttttaaaacaatttataagacaactaa 33210228  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 20632681 - 20632719
Alignment:
Q  309 aaaagttattaaaaaatggttgtatgaatatcatttctc 347  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  20632681 aaaagttatcaaaaaatggttgtataaatatcatttctc 20632719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 52100299 - 52100257
Alignment:
Q  309 aaaagttattaaaaaatggttgtatgaatatcatttctcattt 351  Q
    |||| |||||||||||||||||||  |||||||||||||||||    
T  52100299 aaaaattattaaaaaatggttgtacaaatatcatttctcattt 52100257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 33976388 - 33976465
Alignment:
Q  270 ataaaaacacaatgagagtattataaaaagaattgtcttaaaagttattaaaaaatggttgtatgaatatcatttctc 347  Q
    ||||||| ||||||||||||| | ||| || |||||| |||||||| ||| ||||||| |||   |||||||||||||    
T  33976388 ataaaaaaacaatgagagtatgaaaaagaggattgtcataaaagttgttacaaaatggatgttcaaatatcatttctc 33976465  T

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